Ipomoea triloba (trilobed morning glory): 116012781
Help
Entry
116012781 CDS
T07384
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr04120
Ubiquitin mediated proteolysis
itr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116012781
04120 Ubiquitin mediated proteolysis
116012781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
itr04121
]
116012781
Enzymes [BR:
itr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116012781
Ubiquitin system [BR:
itr04121
]
Ubiquitin ligases (E3)
U-box type E3
116012781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Herpes_UL69
Motif
Other DBs
NCBI-GeneID:
116012781
NCBI-ProteinID:
XP_031108301
LinkDB
All DBs
Position
3:complement(947052..953594)
Genome browser
AA seq
1041 aa
AA seq
DB search
MATQKPQRTPEEIEDIIIRKIFLVSLIDSMENDSRFVYLEMTAAEVLSEGKDLRLSRDLM
ERVLIDRLSGNFAAAEPPFQYLVNCYRRAHEEGKKIGNMKDKSVRSEMELVVKQAKKLAV
SYCIIHLGNPDTFPNWETNTSNVSPLLPLIFSEVSLAVDGFGGSSSSGGVTCPPGLLDDF
FKDGDFDSLDPILKQLYEDLRGSVLKVSALGNFQQPLRALLLLVKYPVGSKSLVNHPWWI
PKNMYMNGRVIEMTSILGPFFHVSAIPDNTLFKSQPDVGQQCFSDASTRRPADLLSSFTT
IKTVMNNLYDGLTEVLKCLLKNTNTRENVLEYLAQVINKNASRAHIQVDPLSCASSGMFV
NLSAVMLRLCEPFLDHNLSKRDKIDSSYVFYSKRLELRDLTAMNASSEEVSEWISGNNPG
KADACKDSSGGEFRLLESQEATSSGNNTGGSSILHDNKPKSSCTEKDKYSFICECFFMTA
RVLNLGLLKAFSDFKHLVQDISRCEDSLSTFRAMSEQGQAPQSQNDIARLEKVLELYNQE
KLCYEAQILRDGGLLQRALSFYRLMVVWLVDLVGGFRMPLPSTCPMEFASMPEHFVEDAM
ELLIFASRIPRALDGILLDDFMNFIIMFMGSPQYIRNPYLRAKMVEVLNCWMPRRSGSSA
TTTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRN
AWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNRVEWEQRPAQER
QERTRLFHSQENIIRIDMKLANEDVSMLTFTSEQITAPFLLPEMVERVASMLNYFLLQLV
GPQRKSLSLKDPEKYEFRPKELLKQIVKIYVHLARGDKENIFPAAITKDGRSYNEQLFSA
AAVVLRRIGEDSRIIQEFIDLGAKAKVAATEAMDTEAALGEIPDEFLDPIQYTLMKDPVI
LPSSRITVDLPVIQRHLLSDSTDPFNRSHLTADMLIPNTELKAKIEEFVRASQKSKKRGE
DLGMQSTKTTIQTTDTSTLIE
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcagaaaccgcagaggacgccggaggagatcgaggatataatcatccggaaa
atcttcctcgtgtcgttgatcgattcgatggagaatgattctaggtttgtgtatttggaa
atgacagcggcggaggtgctcagcgaggggaaggatttgaggttgtctagggatttgatg
gagagagtcctgatagatcgactttccgggaactttgctgccgccgagccgccattccag
tatttagttaattgttaccgtcgagcgcacgaggaggggaagaagattgggaatatgaaa
gataagagtgtgagatctgagatggaattggtggtgaaacaagcaaagaagttggctgtt
tcctactgtataatacatttagggaaccctgatacgtttccaaattgggaaaccaatacg
tccaatgtttctcctttgctgcctttgatattctcagaggtttctcttgcagtggatggg
tttggggggagtagtagcagtggtggagtgacttgtccaccagggcttctggatgatttc
tttaaagatggggattttgatagtctagacccaattttgaaacagttgtatgaggatttg
agaggaagtgtgctaaaggtatctgctttggggaattttcagcagccactgagagctttg
ttgctattagttaagtatccagtagggtcaaagtctctggtgaatcatccttggtggata
ccaaagaatatgtacatgaatgggagggttattgagatgaccagcattttgggccctttc
tttcatgtcagtgctatacctgataatacattattcaaaagtcagcctgacgttggccag
cagtgcttctcagatgcatcaacacgccgtccagctgatctactgtcttccttcacaaca
atcaaaactgtgatgaacaacttatatgatggcttgacggaagtgctcaagtgtcttctt
aagaatacaaacacccgtgaaaatgttctcgaatatcttgcgcaagtgatcaacaaaaat
gcatcgagggctcatattcaggttgatccattatcctgtgctagttcaggcatgtttgtc
aatctcagtgctgttatgcttcggctctgtgaaccatttttagatcacaatttgtcaaaa
agggacaagattgattccagctacgtgttctatagtaaacgtttggaattgagggattta
actgctatgaatgcatcatctgaagaagtctctgaatggataagtggaaataatcctggg
aaggcagatgcctgtaaagatagtagtggtggagaattcaggttgttagaatctcaggaa
gccacaagctctggcaataatactgggggatcttctatcctacatgacaacaaaccaaaa
tccagttgcaccgaaaaagataaatactcattcatttgtgaatgcttcttcatgacagca
agggtccttaatctaggccttttaaaagcattttctgactttaagcatcttgttcaggac
atttcaaggtgtgaagatagtttgtctacttttagagccatgtcagaacaaggacaagct
ccacaatctcagaacgatatagcacgccttgagaaagtgcttgagttgtataatcaggag
aagctgtgctatgaagctcagatacttagggatggagggcttcttcaacgggcattgtcc
ttctataggctaatggttgtttggttggttgaccttgttggtggtttccggatgcctcta
ccatcaacttgccctatggaatttgcatccatgcctgagcactttgtggaagatgccatg
gagttgcttattttcgcttctagaatacctagagctttggatggtatattattggatgat
ttcatgaactttattatcatgttcatgggaagtccacagtatattagaaacccatattta
agagcgaagatggttgaagtccttaactgttggatgcctcgtagaagtggctcatctgca
actacaacattgtttgaggggcaccaactttctctggagtatcttgtgaggaatctcttg
aagctttatgttgatatcgaattcacaggttcccacactcagttctatgacaagttcaat
atccgtcacaacattgccgaacttcttgaatacctatggcaggttccaagccatcgcaat
gcgtggagacagattgctaaagaggaggagaagggtgtctatttgaatttcttgaacttc
ttaatcaatgatagcatttatcttcttgatgaaagtctcaacaaaattcttgaactcaaa
gaactggaagctgagatgtctaatagagtggagtgggagcaaagaccagctcaagagagg
caggagaggactcgacttttccactctcaggagaatatcattcgaattgatatgaagctg
gcaaatgaagatgtgagcatgctgacatttacttcagaacagatcacagccccctttcta
cttcctgagatggtggagagagttgctagtatgctgaactactttctgttacaactcgtg
ggcccacagagaaaatctctaagcttaaaagaccctgaaaagtatgaatttcgtccgaaa
gagttgttaaagcagattgtcaaaatatatgtgcatttggctagaggagataaggagaac
atcttcccagccgcaatcactaaagatggtcgttcatacaatgagcagttgtttagtgct
gcagctgttgttcttagaagaatcggtgaagactcgaggatcatacaggagtttattgat
ctcggtgctaaagccaaagttgcagcaacagaagccatggacaccgaagctgctcttgga
gaaatccctgatgaattccttgatcctattcaatatacattgatgaaggatcccgtcatt
ctgccctcatcaaggatcacagttgacttgcctgttattcagcggcatcttcttagcgat
agtacggatccattcaaccgttctcatctaaccgcggacatgttgattccaaacaccgag
ctgaaggccaaaatcgaagaattcgtccgggcatcccaaaaatcgaaaaagcgtggtgaa
gatttgggtatgcaaagcacaaaaacaacaatccaaacaacagacacttcaacgttgatc
gaatag
DBGET
integrated database retrieval system
