Ipomoea triloba (trilobed morning glory): 116012782
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Entry
116012782 CDS
T07384
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116012782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116012782
03041 Spliceosome [BR:
itr03041
]
116012782
03036 Chromosome and associated proteins [BR:
itr03036
]
116012782
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116012782
Spliceosome [BR:
itr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
116012782
Complex B
116012782
Complex C
U2 SnRNP specific factors
116012782
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
116012782
TFTC complex
116012782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
116012782
NCBI-ProteinID:
XP_031108302
LinkDB
All DBs
Position
3:15649233..15654583
Genome browser
AA seq
1212 aa
AA seq
DB search
MYLYSLTLQKPTGILCAINGSFSGGKVQEIVVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNCFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITYSICGVDCGFDNPI
FAAVELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDIRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSSTLMETDEGFQPVFFQPRKLKNLVRIDQVESLMPIMDMKVINLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSLQSVSSPPDSLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMVTGQLSDARSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RKFVLQPKRKLAVIIESDQGALTAEERENAKKECFADAGMGVNGNSDKMENGGDEEDNED
PLSDEQYGYPKAESDKWVSCIRILDPRTTQTTCLLELQDNEAAFSICTVNFHDKEHGALL
AVGTTKGLQFWPKRSFEAAYIHIYKFKEDGRVLELLHKTQVEEVPLALCQFQGRLLAGIG
PVLRLYDLGKKRLLRKCENKLFPSTITSITTYRDRIYVGDIQESFHYCKYRRDENQLYIF
ADDTVPRWLTATCHVDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNG
APNKVEEIVQFHVGDVVSCLQRASLIPGGGECVIYGSVMGSVGAMLPFTSRDDVDFFSHL
EMHLRQENPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEI
LKKLEEIRNKII
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctccagaagcctaccggcatactgtgtgccatcaacggg
agcttctccggcggaaaagtgcaagaaattgtagtcgcccgtggcaaagtcctcgacctc
ctccgccctgatgacaacggtaagctccaaaccctcctctccgttgaaatcttcggtgcc
attcgttcgttagctcagtttcgacttactggcgctcagaaagattacattgtggtgggg
tcggattcgggaaggatagtgatattggagtataataaggagaagaattgtttcgataaa
gtccatcaggagactttcgggaagtctggatgtaggagaatcgttccgggtcagtacctg
gcgattgacccgaaaggtagggctgttatgatcggggcttgtgagaaacagaagcttgtt
tatgttttgaatagggatactgcagctaggttaacgatttcctcacctctagaagctcac
aagagccacacaataacgtactcgatatgtggtgttgattgtggatttgataaccccata
ttcgctgcggttgagttggattattctgaggctgatcaggatccaactggccaagctgcc
agtgaggctcagaaacatttgacattttatgagttggacttggggcttaatcacgtctcc
aggaagtggtcagaacaggttgataatggtgctaaccttcttgtgactgttcctggtggt
ggggatggaccgagtggtgtgcttgtgtgtgctgaaaattttgttatatataagaaccaa
ggtcatcctgatattcgggctgtgattcctaggcgtgcagatttgcctgctgagcgaggt
gttctgattgtttcagctgctatgcataagcagaagtccatgtttttctttcttttgcaa
acggagtatggagatatttttaaggttactttggatcatgacaatgacagggttaaggag
ttaaagatcaagtactttgatacaattccagtcacgtcttcattatgtgttttgaagtca
ggtttcctgtttgctgcatcagagtttgggaaccatgctttgtatcagtttcaggcaata
ggagatgatccagatgttgaagcttcatcatctacacttatggaaactgatgaaggtttc
cagcctgtatttttccagccaaggaagctgaagaatcttgttaggattgatcaagtggag
agcttgatgccaatcatggacatgaaagtgataaatctttttgaggaagagactccccaa
atattttcactctgtgggagaggtcctcgatcatctttgcggatactgagacctggtttg
gctgttagtgaaatggctgtttcacagcttcctggcgtcccaagtgctgtatggactgtg
aaaaagaatgtcaatgatgaatttgatgcttatattgtcgtctcatttgcaaatgcaact
cttgtgctttctattggtgagactgttgaagaagttagtgatagtggatttctagatact
actccatcactctctgtctcgttgattggagatgactcccttatgcaagttcaccctagt
ggcattcggcatattagagaagatgggcgcattaacgagtggagaactcctgggaagaga
actattgttaaggttgggtctaatagactccaggtggtaattgccctgagtggaggtgag
cttatatattttgaagttgacatgactggtcagttgatggaggttgagaagcatgagatg
tcaggtgatgtagcttgtttggacattgcccctgttcctgaaggcagacagaggtctcgc
ttccttgctgttggatcatatgacaacaccatccgtattctgtcactggatccggatgac
tgtatgcagatactgagtttgcaaagtgtgtcttcccctccagactctctcctctttcta
gaagttcaggcttctgttggtggggaggatggtgcagaccatcctgctagtctctttttg
aatgctggtttacaaaatggggttttgttcagaacagtagtggatatggtaacaggtcag
ctttcagatgctcgttcaaggttcttagggcttagggctcctaagctcttttctattatt
gtgaggggaaggcgtgcaatgctctgcttgtccagtagaccctggcttggttatattcac
caaggacatttccttttaacaccactatcatatgaaacacttgaatatgctgcatcattt
tcatctgatcagtgtgctgaaggtgtagttgctgttgctggtgatgccttgagggttttt
actattgaaagattgggggaaacattcaatgaaacagctatacctttgagatatacccca
aggaaatttgtgcttcaacctaaacggaagctagcagtaatcattgagagtgatcaagga
gcacttactgcagaagaacgtgaaaatgctaaaaaggagtgctttgctgatgctggaatg
ggggtcaatggcaattcagataaaatggagaatggaggtgatgaagaggataatgaggat
ccactctctgatgagcagtatggttatccaaaggcagagtcagacaaatgggtctcctgc
atcagaatccttgacccaaggacaactcagaccacttgtctgcttgaacttcaggacaat
gaagctgcatttagtatatgcactgtaaatttccatgataaggagcacggagcacttctt
gctgttggtaccacaaagggactgcaattttggcccaagcgatcatttgaagctgcatac
atacatatttacaaattcaaggaagatggaagggtacttgaacttttgcacaagacacaa
gtggaagaggttcctcttgcattgtgccagttccaaggaagactattggctgggattgga
cccgtccttaggttgtatgatttggggaagaaaagactcctaaggaagtgtgagaataag
ctcttccctagcacaatcacatctattactacctaccgtgatcgcatttatgttggtgac
attcaagagtcattccactattgcaagtatcgccgcgatgagaaccaactttacatattt
gctgatgacacagttccaagatggcttactgcaacatgccatgtggactttgacaccatg
gcaggggcagacaagtttgggaacatctattttgtgcgtctgccacaggatgtgtcagat
gagattgaagaagatccaactggcgggaagataaaatgggaacagggaaagctgaatgga
gcacccaacaaggttgaagagattgtgcagtttcatgttggtgatgtggttagctgcctg
caaagggcatcacttattccgggaggtggggagtgcgtcatctatgggagtgttatgggg
agcgtaggtgcaatgcttccatttacctctagggatgatgttgacttcttttctcatttg
gagatgcatttgaggcaggagaacccaccattgtgtggcagagaccacatggcctacaga
tctgcatacttccctgtcaaggatgtgattgatggagacttgtgcgaacagttcccgact
ttgcctatggacatgcagcgcaaaattgcagatgagctagatagaactccaggggagatt
ttgaaaaaactggaagaaataaggaacaaaatcatatga
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