Ipomoea triloba (trilobed morning glory): 116014817
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Entry
116014817 CDS
T07384
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
itr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116014817
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116014817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116014817
04121 Ubiquitin system [BR:
itr04121
]
116014817
03400 DNA repair and recombination proteins [BR:
itr03400
]
116014817
Enzymes [BR:
itr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116014817
Spliceosome [BR:
itr03041
]
Complex B
Other components
Prp19 complex
116014817
Complex C
Prp19-CDC5 complex
116014817
Ubiquitin system [BR:
itr04121
]
Ubiquitin ligases (E3)
U-box type E3
116014817
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
116014817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_EIPR1
NBCH_WD40
PEP5_VPS11_N
PROPPIN
U-box
Beta-prop_DCAF4
zf-Nse
WD40_like
DUF1635
Beta-prop_DCAF12
PAS_11
PUMA_CC
Cnn_1N
Motif
Other DBs
NCBI-GeneID:
116014817
NCBI-ProteinID:
XP_031110630
LinkDB
All DBs
Position
4:8757741..8763733
Genome browser
AA seq
525 aa
AA seq
DB search
MNCSISGDVPEDPVVSKNSGLLFEKRLIERHISDYGKCPVTGEPLTMDDIVPIKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARELLAQAEREIPMTAATATAANTPTLSNGKRAAEDEEMGPEGKKSRPGISSAIIT
ELTDCNTNLSQQRKKRQIPPTLAPVDALERYTQLNSYPLHKTNKPGILSLDICYPKDIVA
TGGIDNNAIIFDRSSEQIISTLSGHSKRVTNVKFAVEGEVVVTSSADKTVRVWQGSENGS
YDCRHILKDHTAEVQAVTIHATNNYFVTASLDGTWCFNELASGLCLAQVADTSGSESYTS
AAFHPDGLILGTGTSGSIVKIWDVKSQANVARFDGHIGTVTAISFSENGYFLATAAQDGV
KLWDLRKLRNFRTFTPYDDDTPTQTVEFDQSGSYLALGGSDIRVYQVASVKSEWGCIRTF
PDLSGTGKATCLKFGPDAKYIAVGSMDRNLRIFGLPQEDDGQPED
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgaactgctcaatttccggagatgtcccggaggatccggtagtctcaaagaattctgga
cttctgttcgagaagcgtttaatcgaacgccacatctctgactatggaaaatgtccagta
actggagagcctctgacaatggatgacattgtaccaattaaaactggaaagatagtgaag
ccccgacctgtccaggctgcaagtattcctgggatgttgggaatgtttcagattgaatgg
gatggtctgatgctatcaaactttgcattggagcaacaattacatactgcaaggcaggag
ttaagccatgctctgtatcagcatgatgctgcgtgccgtgtaattgcaagattgaaaaag
gaaagggatgaggcaagggaattattggctcaggctgaaagagagatacccatgacagca
gctactgcaactgcagctaatactcccacattgagcaacgggaaaagagctgctgaggat
gaggagatgggtcctgaaggcaagaaaagtcgcccagggatttcatcagctattattaca
gaacttacagattgcaatactaacctttcacagcaaaggaaaaagcgacagataccgcca
acattggcccctgtggatgctttggagagatacacccagctgaacagttaccctcttcac
aaaaccaacaagccgggcatactctctttggacatctgttaccctaaggacatcgttgct
actggaggcattgacaataatgctatcatatttgatagatcttcagaacagattatatct
acactaagtggtcactcaaagagggttaccaatgtcaaatttgctgttgagggtgaagtg
gtggtcactagttctgctgataagactgttcgtgtatggcaaggatctgagaatggaagc
tatgactgtaggcacattttgaaggatcacactgcagaggtgcaagctgtcaccatccat
gcaacaaataattactttgtgactgcttctcttgatggcacatggtgctttaatgaactt
gcttctggtttatgccttgcccaggttgcggatacttcaggatcggagagctacacatct
gcagcttttcatcctgatggtctaatccttggaacaggtacatcagggtctattgtgaag
atttgggatgtgaagagtcaggcaaatgttgcacgatttgatgggcacattggaactgtt
actgcaatctccttttcagaaaatggttatttcctagcaactgctgctcaagatggggta
aagctctgggatttacgcaaattaaggaattttagaactttcacgccatatgatgacgac
acaccaacccaaacagtggaatttgaccagagtggaagttaccttgccttgggaggatca
gatataagagtctatcaagttgctagtgtgaagtcagaatggggctgcatcaggacattc
cctgatttgtcaggcacaggtaaagccacatgtctaaaatttggtccagatgctaaatac
atagctgttggatcgatggatcgaaacctcagaatatttgggctgccacaggaggatgat
ggtcaaccagaagattaa
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