Ipomoea triloba (trilobed morning glory): 116015334
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Entry
116015334 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 57
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
itr03009
]
116015334
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116015334
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
90S particles
Helicases
116015334
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UTP25_NTPase-like
P-loop_SecA
SecA_DEAD
AAA_22
ParD_antitoxin
Utp25_C
AAA_19
SLAM
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
116015334
NCBI-ProteinID:
XP_031111231
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Position
4:complement(4339439..4344601)
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AA seq
531 aa
AA seq
DB search
MDRDASFLFAGTNFNRKKFTDVFDRFKGKKESDEAEEKLNLIDNGSTQKEEHTSLRVSKK
RKRKGAVSDPVEGFSVFTSSKSKTEADGEGKEHIGSEILEGKKEYYRQLERDAIFRKKHN
IHVSGSNVPSCLQSFTELKSRFGCKSYLLRNLAKLGFKEPTPIQMQAIPVILSGRECFAC
AQTGSGKTFAFVCPILMKLKQTSKDGVRAVILCPTRELAAQTARECKKLTKRKEFHIKLM
TKQLAKSADFSVLHCDILISTPFRLQYAINKRKLDLSRVEFLVLDEADKLFELGLMEQVD
SVFKACSNPSILHSLFSATLPDEVEKIARTIMHDAVRVIIGRKNSASETIKQKLVFVGSE
EGKFLALRQTFSESLNPPVLIFVQNKERAKELYNEVKFDDIRADVIHSDLSQKQRENAVD
NFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSSSAYIHRIGRSGRAGRSGEAITFY
TEADVQFLRNIANVITASGGEVPDWIMSMSKKKWRKHRPQRESISTRPQDD
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggatcgggacgcctcttttctgttcgcgggtacaaatttcaatcgcaaaaagttcacc
gatgtttttgatagattcaaggggaaaaaagaaagtgatgaagcagaagagaagttgaat
ttgattgacaatggaagtactcagaaggaggaacatacatcattgcgtgttagtaagaaa
aggaagaggaagggagcagtttcagacccagttgaaggattcagtgtattcacaagttct
aaatcaaaaacagaagctgatggtgaaggaaaggagcatatcggaagtgaaattttagag
ggaaagaaggaatactataggcaattggagcgggatgcaattttccggaagaaacacaac
attcatgtttctgggagtaatgttccttcatgtctacagagctttacagagttgaaatca
aggtttggatgcaaatcatacctgttacgcaatctggcaaaactaggattcaaagagcca
acaccaattcaaatgcaggctattccagtcatcctatctggacgggaatgttttgcttgt
gcacaaactggttctggaaaaacatttgcttttgtctgtccaatacttatgaagctcaag
caaacttctaaagatggtgtccgagctgtaattctttgccctacaagagagttagctgct
cagacagcaagagaatgcaagaagttgaccaaaagaaaggaattccatatcaaattgatg
actaaacagcttgcaaaaagtgctgacttttcagtgcttcattgtgatatactcatatca
acaccatttcgcttacagtatgctattaacaaaagaaagcttgatttaagtagggttgaa
tttcttgtcttggatgaagctgataagctttttgagctgggcttgatggagcaggttgat
tcagtgttcaaagcttgctcaaatccttcaattttgcactcactgttcagcgctacttta
ccggacgaggttgaaaagattgcacggacaatcatgcatgatgctgttcgagttatcatt
ggtcggaaaaattctgcttctgaaacaataaagcagaaactggtgtttgtaggaagtgaa
gaaggaaaatttcttgctcttcgtcaaactttttcagagagtttgaatccaccagtgcta
atatttgttcaaaacaaagagagggctaaagagctgtacaatgaggtgaagtttgatgac
attagagcagatgtaatacactcagatctctcccaaaaacagagagaaaatgcagttgat
aacttcagagccggaaaaacatgggttttaatcgcaactgatgttattgcccgcggtatg
gatttcaaaggtgtcaattgcgtcatcaattatgattttccagattcttcttctgcatac
attcacagaattggacgatctgggagagcgggaaggagtggagaggccatcaccttctac
acagaagctgatgtccagtttctgcggaacatagctaatgttattactgcatctggaggc
gaggttcccgactggatcatgtcaatgtccaagaaaaaatggaggaagcacagacctcaa
agagaatcaatttcaacacgaccccaagacgactaa
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