Ipomoea triloba (trilobed morning glory): 116016124
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Entry
116016124 CDS
T07384
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116016124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116016124
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116016124
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116016124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
Motif
Other DBs
NCBI-GeneID:
116016124
NCBI-ProteinID:
XP_031112148
LinkDB
All DBs
Position
4:complement(29341455..29342489)
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AA seq
168 aa
AA seq
DB search
MRGLQISLNKTQKIRLERALELLESFSSKTNSNASVTVADVIPVDHEDGVLKGHGTAEMD
GRVVATLCGVVERVNKLVYVRSLRARYKPEVGDIIVGRVIEVIGHFPLESILTCLLYWVI
GAIVNAKVDPKQWRLEINFSQDAVLMLSSMNLPDGIQRRRTAVDELNM
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atgagaggtctacagatttcgttgaacaaaacgcagaaaattaggttggaaagagcactg
gaactgttggagtcgttctcctcaaaaaccaactccaatgcctccgtcaccgtcgccgac
gtcattcccgtcgaccatgaagacggtgtcctcaagggacatgggacggcagagatggat
ggccgtgttgtggcaactctatgtggagttgttgaacgggttaacaagcttgtttacgtg
agatctttgagagccaggtacaagccagaagtaggtgatatcattgtgggtcgagtgatt
gaggttattgggcattttccattagaatccattctcacatgtctgctttattgggttata
ggtgctatagtaaatgcaaaggttgatccaaagcaatggagattggagataaactttagc
caagatgctgtattgatgctttcatctatgaatttgccagatggcattcagaggcgacga
actgcagttgatgaactaaacatgtga
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