KEGG   Ipomoea triloba (trilobed morning glory): 116016724
Entry
116016724         CDS       T07384                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03020  RNA polymerase
itr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116016724
  09124 Replication and repair
   03420 Nucleotide excision repair
    116016724
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:itr03021]
    116016724
   03400 DNA repair and recombination proteins [BR:itr03400]
    116016724
Transcription machinery [BR:itr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     116016724
DNA repair and recombination proteins [BR:itr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      116016724
SSDB
Motif
Pfam: RNA_pol_Rpb4 TRF
Other DBs
NCBI-GeneID: 116016724
NCBI-ProteinID: XP_031112963
LinkDB
Position
4:complement(34766553..34768488)
AA seq 138 aa
MSVEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQIQQMSEDPTNQVSQVFEKSLQ
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKNRGRSLD
DEAIEKMLNDLSLIKKFE
NT seq 417 nt   +upstreamnt  +downstreamnt
atgtcagtagaagaggaggagaacgccgcggagcttaaaatcggagatgaatttctcaag
gcaaagtgtctgatgaactgtgaggtttctttgattcttgaacacaagtatgagcagatt
cagcagatgtctgaggatccaacaaatcaagtttcccaagtgtttgagaagtcacttcaa
tacgtgaagcgtttcagccggtacaagaaccctgatgctgtcagacaagttcgagaaatc
ctgagtagatatcagcttgctgaattcgagctttgtgttctgggaaacctttgcccagaa
accgttgaggaagcgattgccatggtcccgtccattaagaacagagggcgttcactggac
gatgaggcaattgagaagatgctaaatgacctgtcattgataaagaaatttgagtag

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