Ipomoea triloba (trilobed morning glory): 116016843
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Entry
116016843 CDS
T07384
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit 1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116016843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116016843
Enzymes [BR:
itr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116016843
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
116016843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
116016843
NCBI-ProteinID:
XP_031113140
LinkDB
All DBs
Position
4:complement(9407809..9427283)
Genome browser
AA seq
1382 aa
AA seq
DB search
MKRVGEIQFTKQPYIEDVGPRKIKSIQFSTLSGSEIMNSAEVEVFRGVYYDASKNPIPNG
LLDPRLGPPNKTKTCQTCNGDFKQCPGHFGYLNLALPVYNVGYLTMIVDILKCICKGCSR
ILLDEKERQDFLKKMRNPKLEHLKKNELLKRIVKRCTAMASGHKAVACSRCGYINEMVKK
GPLKIIHEQSKHFLDECHRAFAYKKGFKGSIIVXPELDPKTVHSLFKNMIDEDCELLYLS
DRPENLLVTSIPVPPIAIRPSVFVDGGMQSNENDITERLKRIIQANASLRQETSETSILT
RSMASWVDLQMEVAQYINSDVRGLPPQMQASRPLSGFVQRLKGKQGRFRGNLSGKRVEYT
GRTVISPDPNLKITEVGIPILVARILTYPERVSQHNIEKLRQLVRNGPNKYPGAKFIRQP
DGTEISLMYSSRKRHADELKFGYIVDRHLEDGDAVLFNRQPSLHRMSIMCHRARIMPWRT
LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKSGEILVASTQDF
LTSSFLITRKDTFYDRASFSHMCSYMGDAMDSIDLPTPALIKPVELWTGKQLFNVLLRPH
NKMRVYVNLTVREDTYHRKKDLETMCPNDGFVYFRNSELISGQLGKATLGNGNKDGLYSV
LLRDYNAHGAEMCMNRLAKLSARWIGNHGFSIGIDDVQPGKELVEKKRMEIEKGYGMCET
YIASYNKGELELKPGCDAAQTLEAHITNELNDIREKTGQVCTGALPWRNSPLIMSQCGSK
GSVINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRESKLPAAKGFVASSFYEGLTATE
FFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVLYDKTVRNASSCIVQFVYGDDG
MDPSQMEGKESHPLNFNRLFMKVKATCPPGEDKGLSPSEILQVVNKRLSEHDMTPSGGCS
DAFSKSLKEFLQNESITSLERTRRNLKLDAEHNAADNCKALENIALNISGVTHKQLQVFL
ETCISRYHAKKVESGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIIN
AAKKISTPIISAPLTFDDNPAVARIVKGRIEKTLLGQVAKSIKIVMGSRSASIEIVLDME
TIQASFLCIDAYTVKESILQTPRMKLKEHNIMVLNPRKLEVIPQVDRSKILFELQHLKDK
LPTIVVKGISTVERAVINNENGKYNLLVEGTGLQAVMGTAGVDGFNTTSNHIMEVNQVLG
IEAARSSIVKEIQYTMSSHKMRIDLRHMMLLADLMTFKGEVLGITRFGVQKMKDSVLTLA
SFEKTADHLFNAAVSGRDDKIEGVSECIIMGIPMQMGTGMFKVSQSTIHDVELNYRPDAM
MS
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagagtaggagaaattcagttcactaagcagccatacattgaagatgtcggccct
cgaaaaataaaaagcattcagttctcgacgctttcggggtctgaaatcatgaattcagct
gaagtcgaagttttccgtggggtttactatgatgcttcgaagaatcctattcccaacggc
ctgttagaccctcgcttggggcctccaaacaagaccaaaacttgccagacttgcaatgga
gatttcaaacagtgtccaggccactttggatacttgaatcttgctctaccagtttataat
gttgggtatctaaccatgatagtggacatcttgaagtgcatttgcaagggttgttctcgc
atactgcttgatgaaaaagaacgtcaagattttctaaaaaagatgagaaatccaaagttg
gagcatttgaagaaaaatgagctgctaaaaagaattgtaaaaagatgcactgcgatggca
agtggccataaggcagtggcatgttccagatgtggatatataaatgaaatggtcaaaaag
ggtcctttgaagatcatccatgagcaaagcaaacatttcttggatgagtgccatagagct
tttgcttacaaaaagggcttcaagggatctattattgtanctccagagcttgacccaaag
acagttcactccctcttcaagaatatgatagatgaggactgtgaattgctctatcttagt
gacagaccagaaaacctccttgtcacaagtattcctgtgccaccaatagcaattcgccct
tctgtctttgtagatggtggaatgcagagtaatgaaaatgacatcacagagaggctgaag
cgtattatccaagcaaatgcaagtcttcgacaagaaacatctgaaacaagtatactcacc
agaagtatggctagttgggtggatctgcaaatggaagttgcgcaatacataaacagcgat
gttcgtgggttacccccacaaatgcaagcttccaggcctttgagtggttttgtgcagcgc
ctcaagggaaaacagggacgcttccgtggaaatctctcagggaagcgtgttgagtatact
ggccgtactgtaatatcacctgatccaaatcttaaaattactgaggttggaattcctatc
ttagtggctcgaattttgacatatcctgaacgtgtttcacaacataacattgaaaagtta
agacagcttgttcgtaatggacccaacaaataccctggcgcaaaatttattagacagcct
gatggtacagagatttcattaatgtactcaagtagaaagcgtcatgctgatgaattgaag
tttggttacatagttgatcgccatttggaagatggagatgctgttctatttaatagacaa
cccagtttacatcgaatgtcaatcatgtgccatagggcaaggataatgccatggcgcaca
ttaagatttaatgaatcggtttgtaatccctacaatgctgattttgatggcgatgagatg
aatatgcatgtacctcaaacagaagaagctcgtacagaggctcttttgttgatgggggtt
caaaacaatttatgtaccccaaaaagtggagaaatcttggttgcttcaacacaagatttt
ttaacatcttcctttcttatcacaaggaaggatacattttatgaccgtgcttccttttca
catatgtgctcgtacatgggagatgcgatggattcaattgatttaccgacaccagctttg
attaagccagttgagctttggactggaaaacaattgtttaatgtgcttctgcgtccgcat
aataagatgagagtctatgtaaatcttactgttagagaggacacttaccaccgcaaaaaa
gatctagaaacaatgtgcccaaatgatgggtttgtatacttccgtaacagtgagctgatt
agtgggcaacttgggaaggctacgttagggaatggaaataaggatggtctttattctgtg
ctgctaagagattataatgcacatggtgctgaaatgtgtatgaatcggcttgcaaagttg
agtgctcgatggatagggaaccatggattttcaattggtattgatgatgttcaacctgga
aaagagttggtagaaaagaagagaatggaaatagagaagggttatggtatgtgtgaaaca
tatatagcttcatataacaagggggaacttgaactaaaaccaggctgtgatgctgcacaa
acactcgaagcccatatcaccaatgaattgaatgatattcgagagaaaaccgggcaagtg
tgtacaggtgcactgccttggaggaatagtcccttaattatgtctcaatgtggttcaaaa
ggctcagtaatcaatatcagccaaatgattgcatgtgttggccagcaatctgttgggggt
cgtcgtgctcctaatggattcattgatcggagtcttcctcattttcctagagaatcaaaa
cttcctgctgctaaagggtttgtagctagttcattttatgagggtttaactgctacggag
ttctttttccacacaatgggaggaagagaaggcctcgtggatacagcggtcaaaacagct
gacacagggtatatgtctcgtagacttatgaaagcgttggaagacctatctgttctgtat
gacaaaactgtgcggaatgcaagctcatgtattgttcaatttgtgtatggtgatgatggc
atggacccttcacagatggaaggaaaagaaagccatcctctcaactttaatagattattc
atgaaagttaaggcaacatgtcctcctggggaggataagggtttgtcaccttcagagatc
cttcaagtggtgaataaaaggctttcagaacatgatatgactcctagtgggggatgctct
gacgccttctccaaatcattaaaagaattcctgcaaaacgagtccataacaagcttagag
agaacacgtagaaatctaaaattggatgcagaacataatgcagcagacaattgcaaagct
cttgaaaatattgctttgaatatttctggtgtaactcataagcaactacaggttttccta
gaaacctgcatctctcgctatcatgcaaagaaagttgaatctggaactgctattggtgca
ataggagctcagagcattggagaaccagggacccagatgacattaaaaactttccacttt
gctggagttgcaagcatgaatattacactcggagttcctcgcataaaagaaatcataaat
gctgccaaaaaaatcagcacaccaattatttctgcaccacttacatttgatgataaccca
gctgtggcgagaatagtaaaaggtcgtattgagaaaactcttctagggcaggttgcaaag
agtataaagatagtgatgggatcaagatcagcatccatagaaattgtgcttgatatggaa
acaattcaggcttcatttctttgtattgatgcatatactgttaaggaatcaattttgcag
accccaagaatgaaattgaaggaacataacatcatggttttaaatcccagaaagctggaa
gtcatccctcaagttgatcgaagcaaaatcctttttgaacttcagcatctcaaagataag
cttcctacaattgtggttaagggtatcagtacggttgaacgtgctgtgatcaataatgaa
aacgggaagtacaacttgcttgtggaagggactggtcttcaagctgttatgggcactgct
ggagttgatggatttaacacaaccagcaatcatattatggaagtgaatcaggtccttgga
attgaagctgcaaggagttctatagttaaagagattcagtacaccatgtcaagccataaa
atgaggatagatttacgtcacatgatgcttctagctgatctaatgacatttaagggcgaa
gtactaggaataactaggtttggcgttcagaaaatgaaagatagcgtattgacgctagcc
tccttcgaaaagacagccgatcaccttttcaatgctgctgtaagcgggcgggatgacaaa
attgaaggagtaagtgaatgcatcattatgggaataccaatgcagatgggcactgggatg
tttaaagttagtcaaagcaccattcatgatgttgagctgaattacaggccagatgcaatg
atgtcctga
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