Ipomoea triloba (trilobed morning glory): 116017002
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Entry
116017002 CDS
T07384
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116017002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
itr03400
]
116017002
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
116017002
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
116017002
NCBI-ProteinID:
XP_031113355
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All DBs
Position
4:1252747..1256940
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AA seq
714 aa
AA seq
DB search
MARNREGLILVIDVGPSMHSVLPEIEKVCSVLVGKKLIYNKYDEVGVILFGTTETANELT
KEVGGYEHVTVLRSIKVVDDDLVQAVEQIPRGSVDGDFLDAVIVGMDMMIKKYGLTNKGK
KRLCLITNATCPIKDPYEGTKEDQVSTIAAQMKAHGMRMDSVIVRMKQDLDAKKGIIGEN
DFLLSVFSEKTSSKAVYVESATSLLGAIRTRNITPATLYRGDFELSNKLKIKVMVYKKTA
EERFPTLKMYSDKAPPTDKFAKHEITINYEYKVVQDPTREVPPEQRIKGYRYGPQVVPIS
SAEWEAVKFKPEKGVKLLGFSDASNIMRHYYMKDANVFIADPENSKAILAVSALARAMKD
MNRVAIVRCVWRQGQGNVTIGVLTPNVSDKGNVPDSLYFNALPFAEDVREFQYPSFSNLP
SSMLPTEQQQEAADNLVKMLDLAPSDSQEVLLPEFTPNPVLQRFYHYLELKSKHHDAAVP
PLDEMLRRITDPDPELLSRNKTVVDEFRRCFELKDNPKMKKSRRRLIREKPTGSDEEGED
LGKTAEAKRPKPIDFIEHASKVKPEKIGNINPVQDFEDMISRRDSPEWVNKAIQEMKNKI
FYLVESSHEGDTYQKALECLVALRNGCIVEQEPKQFNDLLHNLYASCKEKDLGSFCKQLE
SHGITLITKTEAPDSDILESEARSFMTSSELKAETAMKEPKEEQDIMSIYLGGK
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaaacagggagggtttgattttggtgattgatgtggggccttcaatgcattct
gttcttcctgaaattgagaaggtttgctccgtgttagtgggaaagaagttgatttacaac
aagtatgatgaagtaggagttattttatttgggacaacagagactgcgaacgaattgaca
aaagaagtgggtggatatgaacatgtgacggttctgaggagtatcaaagttgttgatgat
gaccttgttcaggctgtagaacagattcctcgaggaagcgttgatggtgattttcttgat
gccgtaattgttgggatggatatgatgattaaaaagtatgggttaaccaacaaaggaaag
aagcgcctttgcctcatcacaaatgccacatgtccgattaaagatccatacgaaggaaca
aaggaagatcaagtcagcaccattgcagctcagatgaaagcacatggcatgagaatggac
tctgtaattgttagaatgaaacaagatttggatgcaaaaaaaggaattattggtgaaaat
gattttcttttgtcagtattttcagaaaaaacttcctcaaaagcagtatatgttgaaagt
gcaacttcattgttgggtgcaataagaactcgtaatataactcctgccactttatataga
ggtgattttgaactcagcaacaaattgaagatcaaggtaatggtctataagaaaacagct
gaagagagatttcccactctgaaaatgtattcagataaagcacctccaactgataagttt
gctaagcatgaaatcacaattaattatgaatataaagttgttcaagatccaacaagagaa
gtgccaccagaacaaaggattaaaggataccgatatggacctcaagtagttcccatatca
tctgctgaatgggaggcagtgaagttcaaaccagagaaaggtgtgaagcttctaggattc
tcagatgcttcgaatataatgcggcactactatatgaaagatgcgaatgtcttcatagct
gacccagaaaattcgaaggccattcttgctgtctctgcattggcaagggcaatgaaggat
atgaaccgagtagcaattgtccgctgcgtatggagacaagggcagggaaatgtaactata
ggagtccttactcctaatgtgtctgacaaaggcaatgttcctgattcattatatttcaat
gctcttcctttcgctgaggatgtgcgggagtttcaatatccatctttcagcaatcttcca
tcgtcaatgctccctactgaacagcaacaggaggctgcagataatcttgtcaagatgctt
gatcttgcaccgtctgatagtcaggaagtattgctgcctgagttcacgcctaatcctgta
ttacagcggttttatcactatcttgagttgaagtcaaagcaccatgatgctgctgtccct
ccactcgatgaaatgcttaggaggataacagatcccgatcctgaacttctttctcgaaac
aagaccgtcgttgatgaattcagaaggtgttttgaactgaaagacaacccaaagatgaag
aaatcaagaagaagattgataagagaaaaaccaactggatcagatgaggaaggagaagat
ttgggcaaaaccgctgaagccaaacggcccaaacctattgacttcatagaacatgcatct
aaagttaaacctgaaaaaattggaaacataaatcctgttcaagattttgaagacatgata
tctcgcagagatagcccagagtgggttaataaggctattcaggaaatgaagaataagatc
ttttatctagtggagagctctcatgaaggggatacatatcagaaagcattggaatgctta
gtggctctccgcaatggttgcattgttgaacaggaaccaaaacagttcaatgatttgcta
cataatctttatgcatcctgcaaagaaaaagatctcggaagcttctgtaagcaactcgaa
tctcatggaatcaccttgataaccaagacagaagcccccgacagcgatattttggagagc
gaggccagaagctttatgactagttcagagctgaaagcagaaactgctatgaaggagccc
aaagaggagcaagatatcatgagtatatacttgggtggaaaatag
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