KEGG   Ipomoea triloba (trilobed morning glory): 116017014
Entry
116017014         CDS       T07384                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    116017014
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:itr03021]
    116017014
Enzymes [BR:itr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     116017014
Transcription machinery [BR:itr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     116017014
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 116017014
NCBI-ProteinID: XP_031113377
LinkDB
Position
4:3817690..3833090
AA seq 2102 aa
MEEGTSFEILPGTIRGIKFGLATKQEIVKSSINEFPINHPSQLLNPFLGLPLEAGKCESC
GTAEPGQCEGHFGYIELPIPIYHPDHVSELKRMLSLLCLKCLKLKNRKFQVKHIGVLERM
LSSCCEEVSQISVNEVKNSDGACYLELKLPKNANLDDGFWSFLERYGYRYGDGYSRRLLP
YEAMEILKRIPEDTRRKLSAKGYYPQAGYILEFLPVPPNCLSVPDISDGMNIMSSDHSIT
MLRKVLKQIENIKSSRSGTPNFESHEVEANDLQVAVAQYLEFRGTGKASRDVDKRYGVGK
ESNDTTTKAWLEKMKTLFIRKGSGFSSRSVITGDPFKGVDEIGLPFEVAQRITFEERVSL
HNVAYLQKLVDEKLCLTYKDGSSTYSLREGSKGHTFLRPGQLVHRRIMDGDIVFINRPPT
THKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK
QLLSSHTGNFNLQMGCDSLLAFKLMFENYFFSKACAQQLAMFLPSTLPKPALVKSHISVP
HWTTFQILETALPKCFDCLGDRYEVNKSEVLRIDYSKDTVSSILNDIVSSIYFSKGPKEV
IEFFNALQPMLMEYLYKEGFSISLGDFFISKAAIEKIQGSIQGESKLLNNLRSSYNQYVE
LQLERLLRAEKIPVTAFALHSSAIGHLIDPKSESALNKVVQQIGFLGLQMSDRGKFYSKT
LVKDMTLLFRNKYPSAGHYPSEEYGVVSSCLFNGLDPYQEMVHSISSREVIVRSTRGLTE
PGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVNNESKFQSEFGAGEPVGVLAAT
AMSNPAYKAVLDSSPSSNSSWEMMKEILLCGASFKNDLSDRRVILYLNDCGCGRKYCRER
AAYQVNNHLRKVCLKDAAVEFLIEYGIQQTTYEVLGVGAYLVGHIHLNKKQLDDQGLDLN
EILERCQDKVYSLRRKKKIALLFRRIDLSVSASCCFNQGKSTSREMPCLRFSWPIDSSDD
HLEQTAHLLADTICPVLLETVIKGDHRVSSASIIWSSPETMTWIKSSSKSHPGELAVEVT
LEKEAIKQSGDAWRIVMDSCLPLIHLIDTKRSIPYAIKQVQELLGISCAFEQAVQRLSTS
VTMVTKGVLKDHLLLLANTMTCAGSLVGFNAGGIKALSRSLNVQIPFAEATLFTPRKCFE
RAAEKCHVDSLSSVVASCSWGKHVSVGTGSSFDILLDTRKVELNQQEGQNVYDFLLLMRS
SHAQEEKGTDCLGAEIDDLLPEDEDMNLYLSPERDSDTMKPTFEDGVEDLNENVDEGKSS
GGGWDKVSANTSNTGGGGWDLADKNPTSAKSSADQSDSWSSWGGKKVEEESPGWGKKVDS
DGLSQPATGSWGKATQSNSAKVSTDTPNADGGGWDLFDKNPTTAKSCNDQSDSWSSWGGK
KVEEGSHGGWGKKVDSDGFSQPATGSWGKATQSSSKISESGKVPDQSGSQSSWGKAFGES
GKSLDQPSDNHKQSDQWSSWGKTVKDDVKVTSSSSGDWNQTTEGKLSTSSGWNKPESSKG
LVQSAWGKNANESKGGAYLSSNVHKRADSSPAWGKSPKEDGGQKSGREWSAWKKGNEDAR
LVSPTANASIETAQGDRSSALDWGESGPRSPEGSWSKKGILGEQPKEAASGWASSKGVSG
DWDNVVPRSPTAQKIESHNNTWNSRGVVNERSNDSAGGWGSPKVATSDSTQSQWGVQKST
VKVDSNQSPRGWGSAGSENEKLNEATGVAGGWGSSKGSGDWGTAVPRSPAALREESPNNT
WSCTTAADERGNESAGGWGSPKVGSSEGHGWGSPKVGSSEGHGWGSPKVGSSEGHGQSPW
GPRKRKGGDGNESSRAWGSAGSGSGDWKNKRNRPAKPADDSGTGVAFTSTRQRLDRFTAE
EQDILLEVEPIMQNIRRIMHQSGLNDGDPLSADDQSYIVNNVVNHHPDKAAKIGAGIDYL
MISKHSSFQDTRCFYVVSTDGAKQDFSYRKCLENFIRNKFPDKGDGFNQKYFAKKLPPLP
RPGWKREQNAAPEEAAAAWRREQNAAPEEAAAATEEPKQPSAATEEPKQPSAATEETMTA
ET
NT seq 6309 nt   +upstreamnt  +downstreamnt
atggaagagggtacatcattcgaaatattgcctgggacgataaggggtattaaatttggc
ttagctactaagcaagaaattgtcaagtcctctataaatgagttccccataaatcatcct
agtcagctcttaaatccttttcttgggcttccgcttgaggcaggaaaatgtgaatcttgt
ggtactgctgagccagggcaatgtgaaggtcattttggctacatcgaattgccaatacct
atttatcaccctgaccatgttagtgaattaaagcggatgttgagcttattgtgcttaaag
tgcctgaaattaaaaaacaggaagtttcaggtgaagcatattggtgttcttgaaaggatg
ctgtcctcatgttgtgaggaagtttcacaaatatcagtaaatgaagttaaaaattctgat
ggtgcttgctacctagaattgaaattaccaaagaatgcaaatcttgatgatggcttttgg
agcttcttggagagatatggatatcgctatggtgatggctattctcgtcggttgcttcct
tatgaggcaatggaaatactaaaaagaatacctgaagacaccagaagaaagctttcagct
aagggatattatccacaagctggttatatcctggaattcttgcctgttccaccaaactgt
ctgtctgtgcctgacatttctgatgggatgaacattatgtcatcagatcattcaattaca
atgctaagaaaagtcctaaaacaaatagagaacattaaaagttcaaggtctgggactcca
aactttgagtctcatgaagtggaagcgaatgacttacaagttgcagttgcacagtatctt
gagtttagggggacaggaaaggcatctcgtgatgtggataaacgttatggagttgggaaa
gaatcaaatgacacaactaccaaggcttggctcgagaaaatgaaaacattatttattaga
aaggggtctggcttttcttctcgtagtgtgattactggtgatccttttaagggggttgat
gaaattggattaccatttgaggttgcccaaagaatcacttttgaagaaagagttagtctg
cacaatgtggcatacctgcagaagttagttgatgaaaaattgtgcttgacctacaaggat
ggatcatccacatattccctaagggaaggatccaaagggcacacctttttgaggcctggc
cagcttgttcacaggagaattatggatggggatattgtgtttatcaataggccaccaact
acacataagcattccttgcaagctttatctgtatatgtacatgatgatcacacagtcaag
atcaatccgctcatctgtgggcccctaagtgctgactttgatggtgattgcatacatctg
ttttatccccagtctctagctgccaaagcagaggttttggagctcttctctgtagagaaa
caactattgagttcacatactggtaatttcaatttgcagatgggctgtgactctttgttg
gcattcaaactaatgtttgaaaattacttcttcagtaaagcttgtgcccaacaattggcc
atgtttctcccaagtactttacctaagcctgcacttgtaaagtcacatatttctgtccct
cattggaccacctttcagattttggagactgctttacctaagtgctttgactgtttaggg
gatagatacgaagttaacaaaagtgaggtgttaagaattgactatagcaaggacactgtg
tcatcgatcctcaatgatattgtttcttcaatttatttttcaaagggtccaaaggaggtc
attgagttctttaatgcattgcagcctatgttgatggaatatctgtacaaagagggtttc
agtatcagtcttggggacttcttcatttctaaagctgcaatagagaaaattcaaggaagt
attcagggtgagtctaagctattgaacaacttgcggtcatcctacaaccaatatgtggag
ctacaattggagcgtctcctgagggctgaaaaaatcccagtcacagcttttgctttacat
tcatcggctattggccacttaattgaccctaagagtgagtcggctcttaataaggttgtg
caacaaattgggtttttgggattgcaaatgtcagacagggggaaattctactccaagaca
cttgttaaggacatgactttgctgttccgaaacaagtatccttctgctggtcattatcct
tctgaggaatatggcgtggtgagcagctgcctctttaatggtttggatccatatcaggag
atggttcactcaatatccagtagggaagtgattgtccgttcaacaagaggcctgactgaa
cctggaacattgttcaagaatctgatggcaatcctccgagatgttgttatttgttatgat
gggactgtgagaaatgtatgcagtaattccattattcagtttgaatatggggttaacaat
gaaagcaagtttcagagtgaattcggtgctggtgaacctgttggagtattggctgcaact
gctatgtcaaatcctgcatacaaggcagttcttgattcgtctccaagcagtaattcctcg
tgggaaatgatgaaggaaattctgctgtgtggagccagtttcaagaatgatctatcagat
cgccgtgtaatactctatctcaatgattgtggatgtggaaggaagtattgccgagaaaga
gcagcctaccaagtgaataatcatttgagaaaagtttgtttgaaggatgctgctgttgaa
ttcttgatagaatatggaatacaacaaactacatatgaggttcttggagtgggtgcttac
cttgttggtcacattcatttgaacaagaagcaacttgatgatcaaggtcttgatctcaat
gagattcttgaaagatgccaggataaagtttattccctccggaggaagaaaaagattgct
cttttgttcagaagaattgatttatcagtcagtgcgtcgtgttgttttaaccaaggcaaa
agtacatcaagagagatgccatgtttgagattctcttggccaattgattcaagtgatgat
cacttagagcaaactgcgcatcttcttgctgacacaatttgccctgttctgttggaaact
gttatcaaaggtgatcatagggtctcttctgcaagtataatctggagtagtcctgagaca
atgacttggattaagagctcaagcaagagtcacccgggtgaattggctgtagaagttact
cttgagaaggaagccatcaaacaaagtggagatgcttggaggattgtcatggactcatgc
cttcctcttatccatctaattgacacaaaacgttctataccatatgctatcaaacaagta
caggagttgcttgggatttcttgtgcttttgagcaagctgttcagcgcttgtcaacatct
gtgacaatggttacaaagggtgttctaaaagaccatctacttctattagccaataccatg
acatgtgctgggagtcttgtcggcttcaatgctggtgggataaaagcattatcccgttca
ttgaatgtccaaataccttttgctgaagccactttgtttacaccaaggaaatgctttgag
agggctgctgagaagtgccatgttgattcgttatcaagtgttgtggcatcttgttcctgg
ggtaaacatgtatctgttggtactggatcttcctttgatattcttcttgatacaaggaag
gttgagttaaatcagcaggaaggtcagaatgtatatgatttccttctactgatgcgaagc
agtcatgctcaggaagaaaagggtactgactgtcttggtgcagaaattgatgatttgcta
cccgaggatgaagatatgaacctgtacttatctccagaaagggattcagacacaatgaaa
ccaacctttgaagatggagttgaggatctgaacgagaatgtggatgaaggcaaatcaagt
ggcggtggttgggataaggtttcagccaacacatcaaatacaggtggtggtggatgggac
ctggctgacaaaaacccaacgtcagctaaatcgtctgctgatcaatcagactcctggtct
tcctggggtggtaaaaaggttgaagaagaatcccctggttggggtaaaaaagtggatagc
gatggtctctcccagcctgctactggatcctggggcaaggcaacccaatctaattctgct
aaggtttcaaccgacacaccaaatgcagatggcggtggatgggatctgtttgacaaaaac
ccaacaacagctaaatcatgtaatgatcaatcagactcctggtcttcctggggcggtaaa
aaggttgaagaaggatcccatggtggttggggtaaaaaagtggacagtgatggtttttcc
caacctgccactggatcctggggcaaggcaacccaatctagttctaagatttcagaatct
ggaaaagtccctgatcagtctgggtcacaatcttcttggggcaaagcctttggagaatct
ggaaaaagccttgatcaaccttcggataatcataaacagtctgatcaatggtcttcatgg
gggaaaactgtcaaagatgatgttaaagtcacatcatcaagttctggagattggaaccaa
acaactgaaggaaaattgtcaacctccagtggttggaataaaccagaatctagtaaaggc
cttgttcagtcagcatgggggaaaaatgctaatgaatccaagggaggtgcttatctttcc
agtaatgtacataagcgagctgattcctcccctgcgtggggaaaaagtcccaaagaagat
ggtgggcaaaagtcaggacgggaatggtctgcatggaaaaaaggaaatgaagatgcaaga
ttggtttcaccaactgctaatgctagcatagaaacagcacaaggtgatcgctcatctgct
ttggactggggtgaaagtggtcctaggtctccagagggtagctggagtaaaaaaggcata
ctgggtgaacagcctaaagaagcggctagtggttgggcttcctctaagggtgttagtggt
gattgggataatgttgtacctaggtctcctacggcacagaaaatagaatctcataacaat
acctggaattccagaggtgtggtaaatgaaaggtctaatgactcagctggtggttggggt
tctccaaaggttgccactagtgatagtacacaatctcaatggggtgtgcagaagagtact
gtaaaagtggatagcaatcaaagtccacgaggctggggctctgcaggttctgaaaatgaa
aagttaaatgaagctactggagtagctggtggttggggttcttcaaagggtagtggagac
tggggtactgctgtacctaggtctcctgcagcactgagggaagagtccccaaataatacc
tggtcttgcacaactgctgcagatgaacgtgggaatgaatcagctggtggttggggttct
ccaaaggttggttctagtgagggtcatggttggggttctccaaaggttggttctagtgag
ggtcatggttggggttctccaaaggttggctctagtgagggtcatggacaatctccatgg
ggtccgcgcaagagaaaaggaggagacggcaatgaaagttcacgagcttggggctctgca
ggttcaggttctggagactggaagaataaaagaaaccgccctgcaaagccagctgatgac
tccggtactggtgtagcattcacctcaacaaggcagaggctggatagattcactgcagag
gagcaagatattctcctagaggttgaaccaattatgcaaaacatcagaaggataatgcac
cagtcagggttgaatgatggtgatccattatctgctgatgaccagtcatatattgttaat
aatgttgtcaatcaccacccggataaggccgcaaaaatcggagccggaattgattacctt
atgattagcaagcacagtagtttccaggacactagatgcttctatgtggtctccactgat
ggtgctaaacaagatttttcctaccgtaaatgcctggagaacttcatcaggaacaagttt
ccagataaaggtgatggcttcaaccagaagtattttgcaaaaaagcttccaccactgcct
cgtcccggttggaagcgagaacagaatgctgccccagaagaagcagctgctgcttggagg
cgagaacagaatgctgccccagaagaagcagcagcagcgactgaagaacccaaacaacct
agtgctgccacagaggaacccaaacaacctagtgctgccacagaggaaaccatgactgca
gaaacttaa

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