Ipomoea triloba (trilobed morning glory): 116017072
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Entry
116017072 CDS
T07384
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03022
Basal transcription factors
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116017072
09124 Replication and repair
03420 Nucleotide excision repair
116017072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116017072
03400 DNA repair and recombination proteins [BR:
itr03400
]
116017072
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116017072
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116017072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
116017072
NCBI-ProteinID:
XP_031113456
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All DBs
Position
1:complement(3648626..3654683)
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AA seq
452 aa
AA seq
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MPQVRIVAKNFMDMVASLPAMKLDSLYDNPFICEAILRSLPPLAKKYVLQLLYIDSPIAA
KSIEEWVLADGSTKHKVAIDRLIQLRLLSETFDRKKDSSYQLNPKFQYNLRKHIVHGGIL
PREPMPSNITVRLPKLEELDAYASEQWECFLLHLISSSEAGKTINIRPSMMKVFQRGLMS
QRDDKEPPKLTESGFQFLLMDTNAQLWYIIREYITNAEESGVDSADLIAFLLELSFHVAG
EAYNTNTLTEVQRSIIRDLGDLGLVKLQQGRKESWFIPTKLATNLSISLADTSSRKQGFV
VVETNFRMYAYSSSKLHCEILRLFARVEYQLPNLIVGAISKESLYKAFQNGISSEQIVSF
LQQNAHPRVAERIPAVPENVTDQIRLWESDLNRVEMMPAHLYEEFPSRDAFEAACDFARE
YGGLLWEDSKRMRIVVKAEILANMKEFLRRKQ
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaggatcgtcgcgaagaatttcatggacatggtggcttcattgcccgcc
atgaagctcgacagtctctatgataaccccttcatctgtgaagctattctcagatcactg
cctccattggcaaagaagtacgtactgcaactgctatacatagattcgccaatcgctgcc
aagtctattgaggaatgggtacttgcagatggatccactaagcacaaagtagccattgat
agactaatacagttgagactattgagtgaaacttttgacaggaaaaaggatagttcttat
caattaaatccaaagttccaatacaatcttcgaaagcacatagtccatggtggaatttta
ccaagagaaccaatgccttcaaatatcaccgtgaggcttcctaagttggaggagttagat
gcctatgcctcagaacagtgggagtgcttcctgctgcaccttataagctccagtgaagct
ggcaagacaataaacataaggccttctatgatgaaagttttccagcgtggtcttatgagt
caaagagatgacaaagagccaccaaagttgactgaaagtggatttcagtttttgctgatg
gatactaatgcacagctttggtatatcatcagggagtacataaccaatgcagaggagagt
ggcgtggattctgcagatcttattgcatttcttttggagctcagcttccatgttgcaggg
gaggcatacaacacaaacacattaactgaggtccagcgaagtataattagggaccttgga
gatctggggctggtcaagctacagcagggacggaaagagagttggtttatacctaccaaa
ttagctaccaacctctcaattagcttggcagatacatcatcaaggaaacagggatttgtt
gttgtggaaacaaacttcaggatgtatgcgtattcctcatcaaaattacattgtgagatc
ctgcgcctttttgctagagtggagtaccagcttccaaatctcattgttggtgctatttca
aaagaaagcttgtacaaagcttttcaaaacggcataagttctgagcagatagtttctttc
cttcagcagaacgcacatccaagggttgctgagagaataccagccgttccagaaaacgtc
actgaccagattaggttgtgggaatccgacctgaacagggttgaaatgatgccagcccat
ctttacgaggaattcccctccagagacgccttcgaggctgcttgcgattttgcacgagaa
tatggaggattactgtgggaggactctaagcgaatgcgaatcgtggtgaaggcagaaatt
cttgctaacatgaaagagttccttcgtcgaaagcaataa
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