Ipomoea triloba (trilobed morning glory): 116017339
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Entry
116017339 CDS
T07384
Name
(RefSeq) protein DAMAGED DNA-BINDING 2
KO
K10140
DNA damage-binding protein 2
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03420
Nucleotide excision repair
itr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116017339
09124 Replication and repair
03420 Nucleotide excision repair
116017339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
itr04121
]
116017339
03400 DNA repair and recombination proteins [BR:
itr03400
]
116017339
Ubiquitin system [BR:
itr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116017339
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
116017339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WD40
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WD_LRWD1
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
116017339
NCBI-ProteinID:
XP_031113761
LinkDB
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Position
4:complement(32063011..32067284)
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AA seq
564 aa
AA seq
DB search
MPPQTRRTSFPKVVIERDTDSEESSSEEEDVDNGSVQESESESEEGEVEEAKVEGVEEKV
EDVSSLKKTGKQPITISLKKVCKVCKRTGHEAGFKGATYIDCPMKPCFLCKMPGHTTMFC
PHRVATEFGVVPAPRKNMQNPLEYFFLRQLQPRIHPIKPAFVIPDQVHCAVVRYHSRRVT
CLEFHPTNSNILLSGDKKGQLGVWDFVKVHEKTVYGNIHGCILNNMKFSPANDGSVYGAS
SDGTVSCTDLETGISLSLMNLNPNGWQGPSTWRMLYGLDVNPERSVVLIADNFGYLYMID
MRSNEVIGEPLLIHKKGSKVVGLHCNPFQPDILLSCGNDHFARIWDMRQLKAGSSLCSLP
HKRVVNSAYFSPQSGSKILTTSQDNRIRVWDSIFGNLDTPSREIVHSHDFNRHLTAFRAE
WDPKDPSESLVVVGRYISENYNGTALHPIDFIDITTGQLIAEVMDPNITTISPVNKLHPR
DDILASGSSRSLFIWRPAGESEPGQQRAEEKIVVCGKAADAKRKKFGADSDDESDGDMFP
SNGKNIKNKKVALKSTKYSIKKKR
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcccccgcagaccagaagaacgtccttccccaaagtggtgatcgagcgcgacacggac
tccgaggaaagctcgtcggaagaagaagatgtcgataacggctcggtacaggaatcagaa
tcagaatcagaagaaggagaagtggaggaagctaaagtagaaggcgttgaagagaaagta
gaagacgtctcgtcgttgaagaagacagggaaacagccgatcactattagtctcaagaaa
gtctgtaaggtgtgtaagagaactggccatgaagcagggttcaagggagcaacctacatt
gactgcccaatgaagccgtgttttctctgcaaaatgcctgggcatacaacaatgttttgt
ccacatcgggtggcaacggaatttggtgtcgtgccagcaccacgtaaaaacatgcaaaat
cctttggaatattttttcctgcgccagcttcaaccccgcattcatcctatcaagccagca
tttgtgatcccagatcaagtgcattgtgctgttgttagatatcacagtagacgagttaca
tgcttggagttccaccctactaacagcaatattcttttatctggtgataagaaaggacaa
cttggagtctgggattttgtgaaagtacatgagaagacagtttatggaaatatacatggt
tgcatacttaataatatgaagttcagtccagcaaatgatggatcagtatatggtgcatct
tcagatggaacagttagttgcactgatctagagactggaatttcattgtcattgatgaac
cttaatcctaatgggtggcagggaccaagcacttggaggatgctttacgggttggatgta
aatccagaaagaagtgttgttctcattgccgataatttcggatacctctatatgattgac
atgcgaagcaatgaagtaattggtgaaccacttttgattcacaagaagggtagtaaagtt
gttggtctgcactgcaatccttttcaaccagatatactgttgagttgtggaaatgaccac
tttgcacgtatttgggacatgcgtcagttgaaagctggatcttctctttgcagccttcca
cacaagcgtgttgttaactccgcatatttttccccacaaagtggtagcaaaatacttact
acttcacaggataatcgaatccgtgtgtgggattcaatatttgggaaccttgatactcca
agcagggaaattgttcacagtcatgatttcaatcgacatcttactgctttccgagcagag
tgggacccaaaagatccttcagagtcccttgttgtcgttggccgttacataagtgaaaac
tataatggaactgccttgcatcctattgattttatagatatcaccacaggccagttaatt
gctgaagtgatggatcctaacataacaactatcagtcccgtgaataagttgcatccacgt
gatgatattctagcatcgggtagttcaaggtctcttttcatttggaggcctgctggggaa
tctgagcctggacagcaaagagcggaggagaaaattgtagtttgtggaaaagctgctgat
gcaaagcggaagaaatttggtgctgacagtgatgatgaatctgatggcgacatgttcccc
agcaatggtaagaacattaagaacaagaaagttgctttaaaatctactaaatacagtatc
aagaagaaacgttga
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