Ipomoea triloba (trilobed morning glory): 116017460
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Entry
116017460 CDS
T07384
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116017460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116017460
03009 Ribosome biogenesis [BR:
itr03009
]
116017460
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116017460
Spliceosome [BR:
itr03041
]
Complex A
U2 snRNP components
U2 related factors
116017460
Complex B
116017460
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
116017460
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
90S particles
Helicases
116017460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
FtsK_SpoIIIE
T2SSE
SRP54
AAA_7
AAA_30
NACHT
TsaE
AAA_29
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
116017460
NCBI-ProteinID:
XP_031113908
LinkDB
All DBs
Position
4:complement(28361578..28365834)
Genome browser
AA seq
729 aa
AA seq
DB search
MGTERKRKVSLFDVVDDATTKISKLNGVGAALQPNNAAMSSSVNSWTGRPYSQRYYEILE
KRKTLPVWHQKEEFLQVLKANQTLILVGETGSGKTTQIPQFVLDAVDVETPDKRRKYMIG
CTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSGARTVLKYLTDGMLLREAMTDP
LLERYKVIILDEAHERTLATDVLFGLLKEVLKNRSDLKLVVMSATLEAEKFQGYFNGAPL
MKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKIT
KEINNLGDQVGPVKAVPLYSTLPPAMQQKIFEAAPPPLVEGGPPGRKVVVSTNIAETSLT
IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCYRLYTEKS
FHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGAL
DDDGNLTKLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKA
ADEAKGRFSHIDGDHLTLLNVYHAYKQNKEDPQWCYENFVNHRALKSADNVRQQLSRIMT
RFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDH
KPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKHVLDRLYKKRER
DREQNKKKK
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgggaaccgagaggaagagaaaggtgagtttgttcgacgtcgtggacgacgccaccacc
aagatctccaagctcaacggtgttggtgccgcgcttcagcccaacaacgccgccatgtcc
tcttccgtcaatagctggaccggcaggccctactcccagaggtactatgagatcttggag
aagaggaagactcttcctgtttggcaccagaaagaggagttcctgcaggtcttgaaagcc
aatcaaaccctcatcttggtcggcgaaactggtagtggtaaaaccactcagatacctcag
tttgttcttgatgctgttgatgttgagacccctgataagcgaaggaagtatatgattgga
tgcactcaacctcggagggttgctgcaatgtctgtttctcgtcgagtcgctgaagagatg
gatgtgaccattggagaggaagtgggttatagcattcgttttgaagactgcagtggtgct
cggacagttttgaagtacttgactgatggtatgctgttaagagaagccatgacagatcct
ctcctggaaagatacaaggttataattcttgatgaagctcatgaaaggacactggcaact
gatgttctctttgggcttcttaaggaggtgttgaaaaataggtcagatctcaagttagtt
gttatgagtgccacactcgaggctgagaagtttcagggttattttaatggtgcacctctc
atgaaagttcctggtcggcttcatcctgtggaaatcttttacactcaggagcctgagagg
gactatcttgaagcagctattcggactgtggtgcagatacatatgtgtgagcctcctggt
gacatccttgtttttctcactggagaagaggagattgaggatgcatgtcggaaaataaca
aaagaaattaacaatttgggagatcaagtgggccctgttaaagctgttcctctttattct
acacttccacctgctatgcaacagaagatttttgaagctgctcctcccccactagtggaa
ggtggtcctcctggaaggaaggttgttgtgtccacaaatattgctgagacgtcattgact
atagatggtattgtatatgttatagacccagggtttgcaaagcaaaaagtttataatcct
agggtacgtgttgaatcattgttggtttctccaatttcaaaggcaagtgctcaccagaga
tctgggcgtgctggaagaacgcaacctggaaaatgttatagactttatacagaaaagagt
tttcataatgatcttcaaccacagacctatccagaaatacttcggtcgaaccttgccaat
acagttctaactttgaagaagctagggatagatgacctggtccattttgatttcatggat
cccccggcacctgaaacattaatgagagccttggaggttttgaattaccttggtgccttg
gatgatgatggaaacttgaccaagctgggtgagatcatgagtgagttccccctagatcct
caaatgggaaaaatgcttgttgtcagcccagaattcaactgctccaatgagattctttct
gtttctgccatgctatcagtaccaaattgctttgtccggcctagggaggctcaaaaagct
gcagatgaagcgaaaggtcgttttagtcacattgatggagatcacctcacgctgctgaat
gtgtaccatgcttacaagcaaaacaaggaggatccacaatggtgctatgagaatttcgtt
aatcacagggctctcaagtctgcagataatgtaaggcagcaactctcacgcattatgaca
agattcaacctcaagctgtgtagcacagacttcaacagccgtgactactatgtcaacata
agaaaggccatgttagctggttatttcatgcaggtggctcatttggaacgtactggtcac
tatctgacagtgaaggacaatcaagtggttcacttgcatccttcaaattgcctggatcat
aagccagaatgggttatatacaatgaatatgtgttaacaagcaggaatttcatccggact
gttactgatattcgtggtgaatggttggttgatatagctccacactattatgatctctca
aatttcccccagtgtgaagcaaagcatgtacttgatagactatacaagaagagggagaga
gatagagagcaaaacaagaaaaagaagtaa
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integrated database retrieval system
