Ipomoea triloba (trilobed morning glory): 116017831
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Entry
116017831 CDS
T07384
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116017831
Spliceosome [BR:
itr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
116017831
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_19
NRDE-2
TPR_12
UTP6_C
TPR_7
TPR_MalT
TPR_2
ARM_TT21_N
Motif
Other DBs
NCBI-GeneID:
116017831
NCBI-ProteinID:
XP_031114333
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All DBs
Position
4:30326657..30334625
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AA seq
823 aa
AA seq
DB search
MADHGTVVTQSSAVMDYVSADHSNAGSNASDLENTGNPVVPETSISTEHLGTHTGIGDPV
TSSSVMDSTRSSTVGADSITDLTQQDTPTVVTYDTNENVGGHLDASQVASYATSINGTNN
EATDVASTGITENGIPSDNIHDAAAMHQPVDGSALSAEEERLWSIVRANSLDFGAWTALI
EETEKMSEGDIMKIRKVYDAFLAEFPLCYGYWKKYADHEARIGSMDKVVEVYERAVQGVT
YSVDMWLHYCVFAINTYGDPETIRRLFERALAYVGTDYLSFPLWDKYLEYEYTQQAWSHV
AAIYTRVLEIPNQQLDRYFEGFKELVASRPLSELRTAEEAAAAAAADSEASGEQVEGEVH
PNSESSKPVSASLKDAEELEKYIAVREEIYKKAKEFDSKIIGFETAIRRPYFHVRPLNSA
ELENWHNFLDFIEGGDDFNKVVKLYERCLIACANYPEYWIRYVLCMEASQSMDLADNALA
RATQVFVKRQPEIHLFAARFREQHGDIPGARAAYHLVHTEISPGLLEATIKHANMEHRLG
NLDDACSLYEQAIAIEKGKEHSQTLPLLYAQYSRFLYLVSGKVEKAREILDQVVENAQLS
KPLLEAIIHLESIQPQPKRIDYLDSLVDKFIVPTIDTSTVASIDEREELSSIFLEFLDLF
GDAQSIKKADDRHAKLFLRNRTSSESKKRHAEDYLVSDKTKLSKGVAPAAAASVMGSYPG
GQNQWPGGYSSQPQTWPQTTQTQAQQWNPAYTQQAAYGAYYGSGYTHPQAPTSVPPAAPY
GAYPSTYPAQSYAQPAVAATLTPAQPAPAAVPPTGYYGGGSYY
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccatggcactgtggtgactcaatcatctgctgtgatggactatgtatctgct
gatcatagtaatgcaggttcaaatgcgtctgatttggagaacactggcaatcctgtggtt
cctgagacctctatatctactgaacatttagggactcatactggtattggagatcctgtt
acatcctcctccgttatggactcaactcgcagttctactgttggtgcagatagcattaca
gatttgactcagcaggatacccctacggttgtgacctatgataccaatgaaaatgttggt
ggacatttagatgcatctcaagttgcatcatatgccacttctataaacggcactaataat
gaagcaaccgatgttgcatccactggtattacagaaaatggaattccatcagacaatatt
catgatgctgccgcaatgcaccagccagtggatggatctgctttatctgctgaagaagaa
cgactatggagcatagtgagagcaaattctctagactttggtgcatggactgctcttata
gaggaaactgagaaaatgtcagagggagacattatgaagattcgaaaagtttatgatgca
tttttggcagaatttcctctttgttatggttactggaagaagtatgcagatcatgaggca
cgtattggttctatggataaagttgttgaggtctatgaaagagcagttcaaggagtgaca
tattctgtagatatgtggttgcactattgtgtatttgccataaacacatacggagatcca
gaaactattagaaggttatttgaaagagcattagcttatgttggaacagactacctatca
tttcctctgtgggataaataccttgaatacgagtacacacaacaagcatggtctcatgtt
gctgcaatctacacacgggttttagagattccgaatcaacaattggatcgctactttgaa
ggttttaaggagctagttgcaagtaggccactatcagaattgcgtactgctgaagaagct
gcagcagcagcagctgctgattctgaagccagtggtgagcaagttgaaggagaggttcat
cctaatagcgagtcttctaaacctgtaagtgcaagcttaaaagatgctgaggagttggag
aagtatatcgccgttagagaagagatctataagaaagctaaagagttcgattctaagatc
attggttttgaaacagctatcaggaggccctacttccatgtacgcccccttaactcagca
gagcttgaaaattggcataattttctagacttcatagagggaggcgatgactttaataag
gttgtcaagctgtacgagcgatgcctgattgcttgtgccaactatcctgaatattggata
agatatgttttgtgcatggaagctagtcagagtatggatcttgccgataatgcccttgct
cgtgctactcaagtttttgtgaagagacaacctgagatccacctttttgctgctcgattt
cgggagcagcatggtgatattcctggagctcgagctgcttatcacctggtgcacactgaa
atttcacctgggcttttggaagcgaccattaaacatgccaacatggaacatcgacttgga
aatcttgacgatgcctgttctttatatgaacaagctattgcaatcgaaaaaggaaaagaa
cattcacaaacattacctctgttgtatgcccagtactctcggtttctatacttggtttct
ggcaaagtagagaaagctagagaaatccttgatcaagtggttgaaaatgcacaattgtct
aaaccactacttgaggcaatcatccatttagaatcaattcaaccacagccaaagagaatt
gattatttagattcattagttgataagtttatagttcctacaattgatacttctactgtt
gcaagcattgatgaaagggaggaattatcaagcatctttttggagtttttggatcttttt
ggggatgcgcaatcaattaagaaagctgatgataggcatgccaagctcttcttacgaaac
agaacctcttcagagtctaagaagcgacatgctgaagattatctagtttcagacaagaca
aagttgtcaaaaggtgttgctcctgcagctgctgcatcagtaatgggctcatatcctggt
gggcagaaccagtggcctgggggttatagctcacagcctcaaacatggccacaaacaact
caaactcaagctcagcagtggaatcctgcctatacccaacaggctgcatatggtgcttat
tatggaagcggttatacacatccacaagcacctacatctgtacccccagctgcaccttat
ggtgcttatccttcaacatatccagcacagagttatgcacagccagctgttgctgcaact
ttgactcctgcacagccagctccagcagcagttcctcctacgggctattatggtggtggt
agttactattga
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