Ipomoea triloba (trilobed morning glory): 116018640
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Entry
116018640 CDS
T07384
Name
(RefSeq) protein CHROMATIN REMODELING 25
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116018640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
itr03400
]
116018640
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
116018640
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
116018640
NCBI-ProteinID:
XP_031114497
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All DBs
Position
1:27962436..27968600
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AA seq
965 aa
AA seq
DB search
MHRTQNTETVLERSTGGRQMDDEDEALSASEPSDSSDEVISEPDNDDDDINYNCNSGDED
DDHGAQTSNLRCSPEDRKSENVAALVRGNLEVRRQSILPRVYSVTDAAVNVRKPFKPPSS
NGYSSNNEHLARRLWARKRFVPWGSNRPALVAITNRVNALETTHKDVPEEEICLPPDVEP
LLLWQPEGFGEEGCNSKPIAVEPLLVKYLRPHQREGVQFMFDCVSGLLSTSNINGCILAD
DMGLGKTLQSITLLYTLLRQGFDGKAMVRKSIIVTPTSLVSNWEAEIKKWVGERVKLVAL
CESTREDAISGINNFTSPHSDLQVLIVSYETFRMHSSKFSNDISCDLLICDEAHRLKNDQ
TLTNRALASLSCKRRILLSGTPMQNDLEEFYSMVNFTNPGILGDAAYFRRYYEMPIVCGR
EPSSTEEERRLGTERSTELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQVELYN
HFIHSKNVKRAITEETKQSKILAYITALKKLCNHPKLIYETIKSGSPGTKGFEDCIHLFP
QEMFSGRSGSWTGGAGLWVELSGKMHVLARLLAQLRQSTDDRVVLVSNYTQTLDLFAQLC
RERRYPFLRLDGSTSISKRQKLVNCFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDP
DWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTIEEKIYQRQMSKEGLQKVIQQEQADSE
IQGNSLSTEDLRDLFTFHDSVRSEIHEKISCNRCQEYEVMLDDTCEANSTDEQDKSNQED
IGGFAGLAGCLNKLKSSEKQIGTPKEEDLANWGHHFFPTSVPDTIFQAAAGDEVSFVFTC
QVEGKLVPIESSVKQKPKPQGGQTNISTLKSNLLQRPPALSPRLAVSSMKEPQEAPPQSP
FSGVSSKMSTLPAFFKPVQKQRTNSIKLTRPLDHTQMKSNRVISSRNQLPQKRTSPDAMG
DDDFV
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgcacagaactcaaaacactgaaacagtgcttgaacgaagcacgggaggtcgtcaaatg
gacgatgaagatgaggctctttccgcttcagaaccaagcgattcgagcgatgaggtcatc
tctgagccagacaatgacgacgacgacatcaattacaattgtaacagcggcgacgaagac
gatgaccatggagctcaaacatccaatctccgatgcagtccggaagatcggaagtccgaa
aatgtcgccgctttagtcaggggaaaccttgaagtgagaagacagtcaatacttccacga
gtctattcagtaactgatgcagctgtcaacgtcagaaagccttttaaacctccgagctca
aatggttatagtagtaacaatgaacatctcgcacgccggctctgggcacgcaaaaggttt
gtgccatgggggtccaataggccagctttggttgcaatcacgaacagggtaaatgccctt
gagactactcataaagatgtgcctgaagaagagatatgtctgccaccagatgttgaacca
ttgctgttgtggcagcctgaaggatttggggaggaaggctgtaattcaaaacccatagca
gtggaacctttacttgttaagtacctccgaccacatcaaagagaaggtgtccagttcatg
tttgattgtgtttcaggacttttgagcacttccaatattaacggatgcattttagctgat
gatatgggtcttgggaagacgttgcagtcaatcacactgctttacacacttcttcgtcaa
ggttttgatggaaaagcaatggttaggaaatcaataattgtgactcctaccagtcttgtc
tctaactgggaagctgaaataaagaaatgggttggagaaagagttaaacttgttgctctc
tgtgaaagtactcgagaggatgccatctctggcattaacaattttactagtccacatagt
gacttacaagtattgattgtttcctatgaaacatttcgaatgcattcttcaaagtttagt
aatgatatttcctgtgacctcctcatatgtgatgaggcccacaggttgaaaaatgatcag
acattgactaatcgagccttggcttctttgtcatgcaagcgccgcattttgctgtcaggg
actccaatgcaaaatgatctagaggaattttattccatggtaaattttactaaccctgga
atcttgggagatgctgcatactttcgccgttactatgagatgcccattgtttgtggtaga
gaaccctcttctactgaagaagagaggagactaggtactgaacgttctacagagctgagt
gcaaaagttaaccagtttatattgcggaggactaatgcattgttgtcaaatcacttacca
ccaaagataattgaagttgtatgctgcaagttgacacctttgcaagtggaactttacaac
cattttatacattcaaaaaatgttaaacgggcaattacagaggaaacaaaacaatcgaaa
atcttagcttacattactgccttaaagaagctatgcaatcatccaaagctaatatatgag
acaataaagagtggaagtccagggactaaggggtttgaagattgtatccacttattccct
caggaaatgttttccggaaggtctggttcatggactggtggagctgggctttgggttgaa
ctatctggaaaaatgcatgtattagctcggttattggctcaactccgtcaatcaacagat
gatagagttgttctagtctcaaactacactcagacgctggacctttttgctcaactctgt
cgtgaaaggagatatcccttcttgagacttgatggatctacctcgattagcaaaagacaa
aagttggttaattgttttaatgatccatcaaaggatgagtttgcctttctcctgagtagc
aaggcaggaggttgtggcctcaatttgattggtggaaataggctggtgttatttgatccg
gactggaaccctgcaaatgacaaacaggctgcggctagagtatggagagatggccagaag
aagagggtttatgtctatcggtttttgagtacaggaactattgaagagaagatttaccag
cgtcaaatgtcaaaagagggacttcagaaagttattcaacaagaacaagcagattctgag
atccagggaaattccctttcaactgaagatctaagggacctattcacttttcatgacagc
gtgaggtctgaaattcatgaaaagattagctgcaaccgttgtcaagaatatgaggtgatg
ctagatgacacttgtgaagcaaactctacagatgaacaagataaatccaaccaagaggac
atcgggggatttgcaggtcttgctggttgcttgaacaagttaaaaagctcagagaagcag
attggaactcccaaggaggaggatttagctaactgggggcatcattttttcccaacgtca
gttcctgatactatttttcaggctgcagctggtgatgaggtttcttttgttttcacatgc
caagttgaggggaagctggtgcctattgaatcatcggtgaagcaaaaaccaaaaccccaa
ggcgggcaaacaaacatttccactttgaaaagcaacctactccagagaccaccggcttta
tctccacgcctagcagtatccagcatgaaggaacctcaagaagcaccaccacaatctcct
ttcagtggggtttcctctaagatgagcacattgccagctttttttaagcccgtgcaaaag
caacggaccaactctatcaagctaacaagacctttggaccatacacaaatgaaatccaac
agagtaatctcttcccgaaatcagttaccacaaaaaagaacttctccagatgctatgggc
gatgatgattttgtatag
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