Ipomoea triloba (trilobed morning glory): 116019388
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Entry
116019388 CDS
T07384
Name
(RefSeq) small nuclear ribonucleoprotein SmD3a-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116019388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116019388
03041 Spliceosome [BR:
itr03041
]
116019388
03032 DNA replication proteins [BR:
itr03032
]
116019388
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
116019388
Spliceosome [BR:
itr03041
]
Complex A
U1 snRNP components
Sm proteins
116019388
U2 snRNP components
116019388
Complex B
U1 snRNP components
116019388
U4/U6.U5 tri-snRNP components
116019388
Complex C
U2 snRNP components
116019388
DNA replication proteins [BR:
itr03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
116019388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
116019388
NCBI-ProteinID:
XP_031115426
LinkDB
All DBs
Position
5:complement(29352675..29357543)
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHESTGHVVTVEMKSGELYRGSMLECEDNWNCQLENITYTAKDGRVSQL
EHVFVRGSKVRFMIIPDMLKNAPMFKRLDAKIKGKGTSLGVGRGRAIAMRAKAQAAGRGA
APGRGVVPPVRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtagcttgggaataccggtgaagcttctgcacgagtcgacggggcacgtcgtc
accgtggagatgaagagcggcgagctctacagaggaagcatgttggagtgcgaggacaac
tggaactgccaactggagaacatcacttacactgccaaagatggaagggtttcacaactt
gaacatgtttttgttcgaggaagcaaagtcagattcatgataattcctgatatgcttaag
aatgctcctatgttcaagcgtctagatgctaaaatcaagggcaaaggcacatcacttgga
gttggacgaggacgtgccattgccatgcgagccaaagcgcaggctgcaggtcgaggagct
gcacctggcaggggtgttgtgccacctgtaaggaggtga
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