Ipomoea triloba (trilobed morning glory): 116019502
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Entry
116019502 CDS
T07384
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116019502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116019502
03019 Messenger RNA biogenesis [BR:
itr03019
]
116019502
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116019502
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116019502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf_UBZ
Pcf11_C
zf-C2H2_6
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
116019502
NCBI-ProteinID:
XP_031115586
LinkDB
All DBs
Position
5:17083..22997
Genome browser
AA seq
958 aa
AA seq
DB search
MSNDTSAGASKSAPPSILDRFKAMLKERDEEVRVSSEDGVISPPTMDEVVRLYEIVLSDL
TFNSKPIITELTIIAGEQREHGQGIANAICARILEAPVEQKLPSLYLLDSIVKNIGREYI
RHFSARLPEVFCEAYRQVQPNMFAALRHLFGTWSTVFPSSVLRKIEACLQFSPSTSHQSS
GLTNLRASESPRPGHGIHVNPKYLEARRQLAGHSTINAVGAEKLSSTGRAGLISSDIDAV
KLLPTAAARTVRSSSPFGVGRARSLSPPVDDFAVESTPQISERPSPSHSRIDYGLNGVMA
GDDETIDWHRNLLHDGSSQRLENSVAYSVKKGVDLQGPRALIDAYGIDEREKAFNYHHHK
LGQPDANGIGKRVGVKTWQNTEEEEFNWEDMSPTLGDPSRRNDFSSSMPPSGRFITGPRV
GSLQALSAINDSRRSLSDQAQHSLVKSGREITSKIPGFYEEASLISAPSYSQEPQFLPQD
FPQQSHLRIRVEGGGRAPSMRLSGTGLSTKVGEQKLHLVGNLTTADGKFWRPPSVASRVN
PGFNSSVQDVQAVNTGLSTGAWPTISTHNSQLLNSTSMIPPQKQIKDQFDAMNTVANHGL
NERRIDHIDLKPQFELPRLPVQHPGAVPLILPRSGQISLSQPQLPSQDVLQNKVPPAAMA
VPTHTLMPPSNYGYTPQGQGVSGVQSTLPMVNIPNASLQFTGAALPPIARVPTPAAPQMM
PTLQPSGQGTQSAPQGGTFSNLINTLMAQGLISLSNQAPPEDSVGTEFNMELLKERHEST
ITALYSALPRQCTTCGLRFKSQDAHSSHMDWHVTKNRLSKNRKHNPSRKWFVSLSMWLSS
AEALGTDAVPGFLPLEDVVEKKDDDELAVPADDEQNACALCGEPFDDFYSDETEEWMFRG
AVYMNAPTGSTTGMDRSQLGPIVHAKCRSESSSSCIEASKKHDEDYTDDGGLRKRMRS
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacgatacatctgcgggagcttcaaagtccgcgccgccctcaatactcgaccgg
tttaaggccatgttgaaggaacgagatgaggaggttagggtttcttcggaagatggtgtc
atttcgcctcctactatggatgaggttgtgaggctttatgagattgtgttgtcggacttg
actttcaattcgaagcctatcattactgaactaaccataattgctggggagcagagagag
cacggccagggcattgcgaatgcaatctgtgctcgtattctggaggccccagttgagcag
aaattgccatctctttaccttcttgacagtattgtaaagaatataggcagggaatatata
aggcacttctctgcccgtttgcctgaggtgttttgtgaggcctacagacaagtccagccc
aacatgtttgctgccctgcgtcacctatttggtacctggtcaacagttttcccatcatct
gttctccgcaagattgaagcttgcctccagttttccccatccacaagccatcaatcttct
ggcttgaccaacttgagagcttctgaatctcctcggccaggtcatggaatacatgtaaat
ccaaaatatttggaagcgagaagacaattagcagggcattcaactataaatgctgtagga
gctgaaaagttgagctctactggtcgtgccggacttatatcttctgacatagatgctgta
aaattgcttcctactgcagctgcaaggactgtacggtcatcttctccttttggtgtggga
cgagcaaggtcactctcaccaccagttgatgattttgctgtagaaagcactccacaaatt
tctgaaaggccatcaccatctcattctagaattgattatgggcttaatggagtcatggct
ggagatgatgagacaattgactggcacagaaatcttttacatgatggtagcagtcagcgg
ttggaaaactctgttgcatatagtgtcaaaaaaggagttgaccttcaaggacctagagct
ctgattgatgcatatggaatagatgaaagggaaaaagcatttaattatcatcatcataag
cttggtcagccagatgcaaatggtatcggcaaaagggtaggtgttaaaacatggcaaaat
actgaagaggaagaatttaattgggaagacatgagtccaacacttggagatcctagtcgg
cgtaatgatttttcatcatctatgccaccatctgggagatttataaccggaccccgtgtt
ggttctcttcaagccttatctgctatcaatgattccagaaggagcttatcagatcaggcc
caacattcgttagttaagtctggacgagagataactagtaagattccaggattctatgag
gaggcatctcttatttcagccccaagttatagtcaagaacctcagtttctaccacaagat
ttcccacagcaatcccatctccgtattagggttgaaggaggtggaagagctccctcaatg
cgtctttcaggaactggactttcaactaaagtgggtgagcaaaagcttcatttagttgga
aatttaacaactgcagatggaaaattttggaggcccccaagtgttgcttcaagagtgaat
cctggttttaactcttcagttcaggatgttcaagcagttaacacagggctttcaactggt
gcatggcccaccataagcacgcacaattctcagttattaaattcaacgtctatgatccca
cctcaaaaacaaataaaggatcagtttgatgctatgaatacagttgctaatcatggtctg
aatgagcgacgtattgatcatatagatctcaaaccacagtttgagttgcctcgtttgcct
gttcaacatcctggtgcagtcccattaattcttccaaggtctggacaaatttctctatca
caaccacagttgccaagtcaggatgttctacagaataaggttccaccagctgcaatggca
gttccaactcatactctaatgccaccatcgaattatggctacactccacaaggtcagggt
gtatctggtgtgcaatctactctgcctatggtgaatatcccaaatgcatcgttgcagttc
actggagcagccttgccacccatagctagagttccaactcctgctgcacctcaaatgatg
cctacccttcaaccttctggtcaaggcactcaaagtgctccccaaggtggtactttttcc
aatttgatcaacactttgatggctcaaggtttgatttcattatcaaatcaagctcctcca
gaggactctgtgggcactgagttcaatatggaactcctaaaggagcgtcatgagtcaaca
ataactgctctatactctgcccttcctaggcagtgcacaacatgtggtcttcgattcaaa
tcccaagatgctcatagcagtcacatggattggcatgtaaccaagaaccggctatctaaa
aaccgcaagcataatccttctcgtaagtggtttgtaagtcttagtatgtggctcagtagt
gcagaggcattgggcaccgatgcagttcctggatttctacctcttgaagatgttgtggag
aagaaggatgatgatgaactagctgttcctgcagatgatgagcagaatgcttgtgcttta
tgtggtgagccttttgatgatttttatagtgatgagactgaggaatggatgttcaggggg
gctgtctacatgaatgcaccaactgggtcaacaactgggatggataggtctcaattaggt
cccattgtgcatgcaaaatgcaggtccgagtctagtagcagttgcattgaggcttccaaa
aaacatgatgaggattatacagatgatggaggtctgaggaaacgaatgcgcagttag
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