Ipomoea triloba (trilobed morning glory): 116019707
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Entry
116019707 CDS
T07384
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116019707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116019707
03036 Chromosome and associated proteins [BR:
itr03036
]
116019707
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116019707
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116019707
PBAF complex
116019707
GBAF(ncBAF) complex
116019707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
DUF7685
Motif
Other DBs
NCBI-GeneID:
116019707
NCBI-ProteinID:
XP_031115864
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All DBs
Position
5:complement(20547581..20557230)
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AA seq
780 aa
AA seq
DB search
MPASSEARSRWKKRKPLISRKPKPQQEDEGFEDEEEEEDLDQQQQEIDEDHLNPSSSADR
TASAKESEVLAEGGERICEFPPVIKRAVIGPHSSVLNMVALEMGGQSGESRGQGQNRVVL
ENISYGQLQAISAVPADSPALGVDERGEGSGSGSYVITPPQILPGRGVIKRFGSAGRVHV
LPMHADWFSPNTVHRLERQVVPHFFSGKSTEHTPEKYMECRNQIVANYMENPEKYLSVAD
CQGLVDGVSIDDLTRIVRFLDHWGIINYCANPPKLELRKDGTYLYEEANGELCVPSEALK
SIDSLIHFDKPKCRLKARDVYPELACNSDNESDFDSTIREQLSENRCNYCSRPVSVVYYQ
SQKEVEVVLCLDCFHEGKFVIGHSSLDFVKVSSMKDYGDLDGETWTDQETLLLLEGMQLY
KENWIQVAEHVGSKSKAQCILHFVRLPLDGAQLENIEVPSTSSSLNFCTREEYERPHSYL
NGNNAGSSLQDFDSDDKFPFAHCGNPVMALVAFLASAVGPRVAAACAHASLAALSSDDNV
TVSGNTGQIDGSRPNNGVTVGTTYGKDGNSSGDLANSSQCKGTAPLPVEKVKVAAKIGLS
AAAMKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQMERRRQRM
AGERNMMTSQFGSTAVPRSIGLSGVGTSMINNTSVNSRPPVVSGSQQPFISGYGNNQPLH
PHMQFMPQQGMYGLGPRLPLSAIHPSSASANAMFNAAANSQPALGHPMLRPASGTKPGLG
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcctcagaggctcggtcgagatggaagaagcggaagcccttgatttctcgg
aaaccgaagccccagcaggaggacgaagggttcgaggacgaggaggaggaggaagacctg
gaccagcagcagcaggaaatcgatgaggaccacctaaaccctagcagctccgcggatcgt
accgcctcggctaaggagagtgaggtgcttgctgagggtggggagagaatctgtgagttc
cctccggtgatcaagcgtgctgttattggcccccattcgtcagtgctgaatatggttgct
ctggaaatgggcgggcaaagtggggagagcaggggccaggggcagaacagggttgttttg
gagaacatttcgtatgggcaacttcaggccatctcagctgtgccagctgatagtccggca
ttgggggttgatgaacgaggagaaggcagtgggagtggatcatatgtgatcacaccgccg
cagatactgccaggtcggggtgtaattaagcggtttggaagtgctggccgtgttcatgtt
ctgccaatgcacgcagactggttttccccaaatactgtacacaggttggaaaggcaagtt
gttccacattttttctctgggaagtcaactgaacacacaccagaaaaatacatggagtgt
agaaatcaaattgttgcaaattatatggagaatccagaaaagtacctgtcagtggctgat
tgccaggggttagtagatggtgttagtattgatgatctaacaagaattgttcggtttctt
gatcattggggaatcatcaattactgtgctaatcctcctaaacttgagttacgtaaggat
gggacgtacttatatgaggaggcaaatggtgaactttgtgttccttcagaagctttgaaa
tctattgatagtttgatccattttgacaaacctaaatgtcggctcaaggcaagagatgtt
tatccagagcttgcatgtaatagtgataatgaatctgactttgatagtactatccgtgag
caactgtctgaaaaccgatgcaactattgttcacggccagtttcagttgtgtactaccag
tcacagaaggaggttgaggtggtattgtgtttggattgcttccatgaaggaaaatttgtc
attggtcactctagcctggattttgtcaaggtcagctctatgaaagattatggagatcta
gatggagaaacttggactgaccaggaaacactactacttctggagggaatgcaactgtat
aaagaaaactggatccaagttgcagaacatgttggttctaagtcaaaagcacagtgcatc
cttcattttgttcgcctgcctcttgatggtgctcagctggagaacattgaggttccaagc
acatctagttccttaaatttttgcactagggaagaatatgaaagaccacattcatattta
aatgggaataatgcaggatcaagtttacaagactttgattctgatgacaagtttcctttt
gcacattgtggaaacccagtcatggccctggttgcctttctggcatctgcagtaggacca
agagttgctgcagcatgtgcccatgcatctttggcagctttatccagcgatgataacgta
actgtatctgggaatacaggccagattgatggatcgagaccaaataatggggtgactgtt
ggaacaacatatggtaaggatggcaattcttctggagacttggcaaattcgagtcagtgc
aaagggactgcaccactacctgttgaaaaagtcaaagttgctgccaagattggtctttct
gctgcagctatgaaggcaaaactttttgctgatcatgaagaacgtgagattcaacgacta
tccgctaatatcataaatcatcagttaaagagattggagctaaagctgaagcagtttgct
gaagttgagacattattgatgagggaatgtgaacagatggaaaggagaaggcagagaatg
gctggggaacgcaatatgatgacctcacaatttggatcaactgcagtaccccgatccatt
ggtctatcaggcgttgggacatcgatgatcaataataccagcgtaaatagtcggccgcct
gttgtttcaggttctcaacaacctttcatctctgggtatggcaataaccaaccactccat
ccccacatgcagtttatgccacagcaaggaatgtatggacttgggccgcggttgccactt
tcagctatacacccatcctctgctagtgccaatgctatgtttaacgctgcagcaaattcc
caaccagctctcggtcatcctatgctcagacccgcatctgggactaaacctggtttaggc
taa
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