Ipomoea triloba (trilobed morning glory): 116019901
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Entry
116019901 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 7-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
itr03009
]
116019901
03036 Chromosome and associated proteins [BR:
itr03036
]
116019901
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116019901
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
Pre-60S particles
Helicases
116019901
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
116019901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
YgbB
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116019901
NCBI-ProteinID:
XP_031116130
LinkDB
All DBs
Position
5:22021389..22025987
Genome browser
AA seq
705 aa
AA seq
DB search
MPSVIVADAMASEASKDLKKKGKKTPKPAAETLDSEKKKSRRSKVDSESDSEGSSAEKKR
SKKKEKKRKAAEIDSGDEQRSETSSELVEPVNFKAEKKKKAKLMEAVGSYEEEEEKEEDP
NAITNFRISKPLREALKAKGIEALFKIQAMTFDTILDGTDLVGRARTGQGKTLAFVLPIL
ESLTNGPAKATRKTGYGRPPSVLVLLPTRELALQVFTDFEMYGGALGLTSCCLYGNTPYA
QQENKLRRGVDIVVGTPGRVKDHIMRGNMDLTSLKFRVLDEVDEMLRIGFVEDVEFILGK
VEDLKQVQTLLFSATLQDWVKHIASKFLKPDKKTVDIVGNEKMKASTSVRHIIIPCSISA
RSQLIPDIIRCYSSGGRTIIFTETKGYASELAGLLPGARALHGDIQQSQREVTLAGFRSG
KFLTLVATNVAARGLDIDNVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPKKS
NISRIERESGVKFEHIAAPQPADIAKAIGEEAAVQIAGISDSVIPAFKAAAENLLNTSDL
SPADLLAKALAKAAGYTEIKSRSLLTSMENYVTLQLESGKPVYSPSFVYNVLRRFLSEET
AESIKGLTLTADGTGAVFDVSTEDVDTFIEGAKKAYDISLEVVKTLPPLQEREQSRGGGR
FGGGGRFGGGGRGFSGGRGGRFSGGRGGFSDRRRGGGSGGRGHKW
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgtcattgttgctgacgccatggcctccgaagcctcaaaagacctgaagaag
aaggggaagaagactcccaaacccgccgctgaaaccctagactctgagaagaagaagtca
aggcgtagtaaggttgattcggagtctgattccgaggggagctccgcggagaagaagcgg
agtaagaagaaggagaagaagcggaaggcggccgagattgatagcggcgatgagcagagg
agcgagaccagctccgagttggtggagccggtgaacttcaaggcggaaaagaaaaagaag
gccaagttgatggaggcggttggtagttatgaggaggaggaggagaaggaggaggatccg
aacgcgattaccaatttccggatttccaagcctctcagagaggctttgaaagctaaggga
attgaggcgttatttaagattcaagctatgacctttgataccattttggatggtactgat
ttggtcggtagggctcgtactggtcagggtaaaacactggcctttgttttgccaattctg
gagtccttaactaatggtccagctaaagctaccaggaagactgggtatggtagacctccc
agtgttctggtgcttttacctaccagggagctcgctcttcaggtttttactgactttgag
atgtatggtggggcattggggctaacttcttgttgcttgtatggtaatacaccttatgca
caacaagaaaataaattgagaagaggagttgacattgtagttggaactcctggacgggtc
aaggatcatataatgaggggaaatatggacttgacctctttgaagtttcgtgtccttgat
gaagttgatgaaatgctgaggattggttttgttgaggatgttgaatttattctaggcaag
gtggaagatttgaaacaagttcaaacactccttttcagtgcaacattgcaggattgggtg
aagcatattgcctctaagttcctcaagcctgataagaagacggtagacatcgttggcaat
gagaaaatgaaggctagcactagtgtcagacatattattattccatgctctatctcagcc
agatctcaacttattcctgatattattcgatgctatagcagtggaggtcgcactattatt
tttactgaaacaaagggttatgcatctgagcttgctgggttgttgcctggggcccgggct
ttgcatggagacatacaacagtcccaacgtgaggttacacttgctggtttcagatcaggc
aagttcttgacattagtagccactaatgtggcagcacgtgggttggacattgacaatgtc
cagttaattatccagtgtgaacccccacgtgatgtagaagcttatattcatcgatctgga
agaacaggaagggcaggaaataccggtgttgctgtaatgctttatgatcctaagaagtcc
aacatttctaggatagaaagggaatctggtgttaagtttgagcatattgctgctccacag
ccagctgatattgctaaagctattggtgaagaagctgcagtacaaattgctggaatttct
gatagtgtaataccggcattcaaggctgctgctgagaatctgctaaatacctctgatctg
tcaccagcagatttgcttgcaaaggcactggccaaggctgcaggatatactgagatcaag
agccggtcacttctcacttccatggagaactatgttactctacaacttgagagtgggaag
cctgtctattcaccctcgtttgtatataatgtcttgaggaggttcttatctgaagagaca
gctgaatcaatcaaaggcttgactttaacagctgatgggacgggggcagtttttgatgtg
tctactgaggatgtagataccttcatagaaggtgctaaaaaagcatatgatataagtctg
gaagttgtgaaaacattgcctccattgcaagaaagggaacagagtcgaggtggtggtcga
tttggaggcggtggtagatttggaggtggtggtcgtggcttctccggtgggagaggtggc
cgcttctccggtggaagagggggattttctgatcgaagaaggggaggtggtagtggtgga
agaggccacaaatggtga
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