Ipomoea triloba (trilobed morning glory): 116020028
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Entry
116020028 CDS
T07384
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116020028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116020028
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116020028
mRNA degradation factors
5'-3' decay
Decapping complex
116020028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
TFIIA
Motif
Other DBs
NCBI-GeneID:
116020028
NCBI-ProteinID:
XP_031116335
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All DBs
Position
5:complement(31004170..31010596)
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AA seq
822 aa
AA seq
DB search
MDGFEGPGGIEFSSNPQDLKQVDSNSSGNALFDASQYAFFGNDVVEEVELGGLEDEEDDL
PPPGFDDVEYQLEQEEGEMLASYSDVDDLTSTFSKQLNKVVGSPTKAAFFGDRESRESSS
AADCVQEADFRDWFDQRGFDAERNEESKRWLSHPYSSSAHLIESKPLYRALSYPEQEQQL
QHQQQRPQPRQHISSEAILIPKSSFTSFPPPGGRLPQASPNNLPSTTYHPGGQPIPVSSP
NFSPFSSPQNQMNAMHHGSQYGGVLPQFSGHGHQVHNRIQNQWMNQSTLNPGEHSTPPKN
LMQQQLPHQNGLLPQQVPQQQTQQLGLPHPFQLPFGTSGMQSQRFNHHQPPTSQMNNFEM
FGLADFKDQRTESMLRGRQAAWYSPLGLGIRNQRSDNGWPKFKSKYMSTDEIENILRMQL
AATHSNDPYVDDYYHQACLAKKSAGAKLKHHFCPTNLRDGSSQSRANTETHAFLQVDALG
RVSFSSIRRPRPLLEVDPPNSSATSSSEQKVSEKPLEQEPMLAARVTIEDGICLLLDVDD
IDRFLQFMQTQLPDGGELLSKRRQMLLECLASSLHLVDPLGKNGQSVDIAPKDDLVFLRI
ISLPKGRKLLSRYLQLLFAGSELSRVVCMAIFRNLRFLFGVLPADHGAAETSKNLARTVS
LCVREMDLRVLAACLASVVCSTEHPPLRPVGSPAGDGASIILKSVLERATELLRDPHAGA
KCGMQNRAFWQASFDAFFGLLTKYCFNKYDSVMQSFLTQAPQNMVNNGSDAARAISREMP
VELLRASLPHTSDQQRKLLLDFTQRSMPLPSTGSQSGGNGGM
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggacggatttgagggtccgggtggtattgaattctccagcaatcctcaagatctcaaa
caagttgattctaattcatcaggaaatgctttattcgatgcatcacagtatgcattcttt
ggtaatgatgtagttgaagaagttgaattggggggattagaagacgaagaggatgatcta
cctccacctggttttgatgatgtagagtatcagttggaacaagaagagggtgaaatgtta
gcatcatattctgacgttgatgaccttaccagcacattttcaaagcagttgaacaaggtt
gtcggtagccctacaaaggcagcattttttggtgatagagaatccagagaaagttcatct
gccgctgattgtgttcaagaggcagattttcgtgattggtttgatcaacgtggctttgat
gctgaacgcaatgaggagagcaaaagatggttgtcccatccttactcttcttctgctcat
ctgattgaatcgaagcctttgtacagagcactgtcataccctgagcaagaacaacagctg
cagcaccaacagcagcggccgcagccacgccagcacatctctagtgaagcgatccttatc
ccgaagtcttctttcacttcatttcctcctcctggtgggcggcttcctcaagcttcacca
aacaaccttcctagtactacatatcatcctggtggacagccaattccagtttcttcaccc
aacttttctccgttttctagccctcagaatcagatgaatgccatgcatcatggatcacaa
tatggtggagtcttacctcagttttcaggtcatgggcatcaagtgcataatcgcattcaa
aatcagtggatgaaccaatctactttaaaccctggagaacattctactccccccaagaat
ttgatgcaacagcaattaccccatcaaaatggcttgttgccccaacaggtgccacagcaa
caaacccagcaacttgggcttccacatccattccagttaccctttggcacttcagggatg
cagtcccaacgattcaatcaccatcaacctccaacatctcagatgaacaattttgaaatg
tttggtttagctgattttaaagatcaaaggactgaatctatgctgagaggtagacaggct
gcatggtactctccgctgggtttgggcatccgtaatcagagaagtgacaatggttggcca
aaatttaaatccaagtacatgtcaacagatgaaattgagaatattcttcgaatgcagctt
gctgccactcatagcaacgatccctatgtagatgattattaccatcaagcttgtttggcg
aaaaaatctgctggtgcaaagttaaaacatcatttctgtccaactaatctgagagatggc
agctcccaaagtcgtgctaatactgagacacatgcatttctccaggttgatgcacttggt
agggtttccttctcctcaattcgcaggccacgaccacttcttgaggttgacccaccaaat
tcatctgccactagtagcagtgaacagaaagtgtctgaaaaacccttggaacaggagcca
atgcttgcagctagggtgaccattgaggatgggatctgcctcctccttgatgttgatgat
attgaccgcttcctacaatttatgcaaactcaactcccagacggaggggagctgttgagt
aaaaggaggcaaatgctgttggagtgtctggcatcatcacttcatctcgtcgatccactt
ggcaaaaatggtcagtcagtggatatagcacccaaagatgatcttgtgttcttaaggatt
atctcacttcccaaaggtcggaagctgttatcgcgatatcttcaacttctatttgctggc
agtgaacttagtagggtggtgtgcatggccattttccggaatctgaggtttttgtttggg
gtccttccagcagaccacggagctgctgagacaagtaaaaatttggcaagaactgtttca
ttgtgtgttcgagaaatggatctgagagtacttgctgcctgccttgcatctgtggtttgt
tcaactgagcatcctccactccgtcctgttggaagccctgctggtgatggggcttctata
attctgaaatctgttctggagagggcaacagaactgttaagggatcctcatgctggagcg
aagtgcggcatgcaaaacagagcattctggcaggcgtcttttgatgctttctttggttta
cttacaaagtactgctttaataaatatgactccgtcatgcaatctttcctaacacaggcc
ccccagaacatggtgaataatgggtctgatgcagccagagctattagcagggaaatgcca
gttgaactcttgcgggcaagtcttcctcatacaagtgatcaacagagaaaactgctattg
gattttacacaacggtctatgcctttgccaagtactggtagtcaaagcggaggaaatggt
ggcatgtga
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