Ipomoea triloba (trilobed morning glory): 116020984
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Entry
116020984 CDS
T07384
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116020984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116020984
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
116020984
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
PIN_4
OB_Dis3
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
116020984
NCBI-ProteinID:
XP_031117429
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All DBs
Position
5:28078174..28094001
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AA seq
933 aa
AA seq
DB search
MLQSKSFVRKTKQGKVIKVVREHYLRDDIYCGATFCKTCDVSSARLSSSRILVVDTNVVL
HQIDLLENPAIDNVVVLSVVLEEVKNKNISVYNRLRALCSNSLRKFFVFSNEYHKDTYVK
AMPGESPNDRNDRAIRVATQWYQNHLGGTAQVLLITNDRENKRKASEEGIPAETVESYVR
SLGQPELLDLIVQPPEEDVNMDDVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLR
VNRYNPFEAYVGSESIGDEIIIYGRANMNRAFDGDVVAVEILPREQWHEEKSLAIADNED
EEEEEDIHLVPNSADDAPSVTNLGQSSASEAGHLPSRPSGRVVGIIKRNWHSYCGSLEPM
PLPAGSAGVAHALFVSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDVLSRYPSGHYVRT
IGGIGDRDTESEVVLIENDIDARPFSAQVLSCLPPLPWSVSPEDLASPVRQDLRHIRVFS
VDPPGCKDIDDALHCTALPSGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRI
DMLPKPLTEDVCSLRADVERLAFSVIWEMTPGAEIISTRYTKSVIKSCAALSYVEAQARM
DDSRLVDPLTTDLRNMNALAKIMRQRRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIR
EANQMVEEFMLAANISVAEKILNHYPICSLLRRHPSPTKEMLEPLLRVAAAVGIVLDTTS
SKALADSLDRAVGDDPYFNKLIRILTTRCMTQAVYFCSGELSPPEFCHYGLAAPLYTHFT
SPIRRYADVIVHRLLAASMGIYKLPDVFGDKAQLTSISDNLNYRHRNAQMASRASVELHT
VIFFRKNPTDTEARILKIRANGFIVFVPKYGIEGPVYLTSKREKSGEWLVDEQEQRIKKL
DGSVTYGILQSVRIHLEVVEPQPNRPVLQMTLI
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagagcaaatcattcgtacggaaaacaaagcaggggaaagtaatcaaggtcgtt
agggaacactatctccgtgacgatatctactgcggagccacgttttgtaaaacctgcgat
gtttcttccgctcgcttgagctcctcccgtatcctcgttgtcgacactaatgttgttctt
caccagattgatttgctggagaatcctgcgattgataatgtggtggtgttatcggtggtg
ttggaggaggtgaagaacaagaatatttctgtttataatagacttagagctctatgtagc
aattctctcaggaagttctttgttttttccaatgagtaccataaggatacatatgtgaag
gccatgcctggtgaaagtccaaatgatcgtaatgacagagccatcagggttgcaactcaa
tggtatcagaatcaccttggaggtacagcacaagtgttgctaatcaccaatgatcgagaa
aacaagagaaaggcttctgaagaaggcattccggcagaaactgttgaatcatatgttaga
tcacttggtcagccggaattgcttgacttgattgttcagcctcctgaagaagatgttaat
atggatgatgttgaggacttgaggccttcaaagaggaaggtcatctacagtgagcataaa
ccaatgtcagagattacttctggcttgcatcgtggaatataccaccaaggaaaactccgt
gttaaccgctataatccatttgaagcatatgttgggagtgaaagtattggtgatgagata
ataatctatgggcgtgcaaatatgaatagggcttttgatggtgatgtagtggcagttgaa
attttgcctcgagaacaatggcatgaggagaaatctcttgcaatagctgataatgaagat
gaagaagaagaagaagatatacatctagttccgaacagtgccgatgatgccccgagtgtc
acaaatctagggcaaagttcagctagtgaagcgggtcatctgccttcacgtccatctgga
cgtgttgttggcattataaagcggaattggcactcttactgtgggtctttggagccaatg
cctttgccagcaggttctgctggtgttgcccatgcattatttgtctctaaagaccgcaga
ataccaaagatacggatacaaactcgacagctgggaaatctgctggacaagcggataatt
gttgctgttgattcatgggatgttttatcaagatacccctctggtcattatgttaggaca
attggaggaataggtgacagagacacagaaagtgaggtggttttaattgagaatgatata
gatgccagacctttttcggctcaagttttatcctgcttgccaccattaccttggtctgtg
tcccctgaagatttagcaagtcctgttaggcaggatttgcgtcatattcgtgtttttagt
gtggatcctccaggatgcaaggacattgatgatgcattgcactgtactgctcttcctagt
gggaattttgaagttggagttcatattgctgatgtcacaaattttgttcatcctgggact
ccccttgatgatgaggcctcacaaaggggcacttctgtctaccttgttgagcgtcgcatt
gacatgcttccaaaacctctaacagaagatgtttgttcactccgtgctgatgttgaaaga
ctagccttttcagttatttgggaaatgacacctggagctgagattatctcaacaagatac
acaaaaagtgtgatcaaatcatgtgctgcattatcttatgttgaggctcaagcaaggatg
gatgacagtcgcttggttgatccattaacaacagatttgcggaatatgaatgcattggca
aagataatgaggcaaagacgtattgataggggggcattgacacttgcttctgctgaagtt
aaatttcaaattgacactgaaactcatgaccctcttgatattgggatgtatcaaattcgt
gaagctaaccaaatggttgaagagtttatgcttgctgccaatatttcagttgctgaaaag
atcctgaaccattatcctatttgctcactattaagacgtcatcccagcccaaccaaagaa
atgcttgaacctctgcttcgagtggctgcagctgttggaattgttttggatacaacatcg
tcaaaagcattagctgattctcttgatcgtgctgtgggtgatgatccatactttaataag
ctgatccgtattttaacgaccagatgcatgacacaggcagtttatttttgcagtggagaa
cttagtccaccggaattttgtcattatggtcttgcagccccactgtatacacatttcacc
tcaccaataagaagatatgcagatgtcattgtccaccgactgcttgctgcatccatgggg
atttacaaacttcctgatgtttttggtgacaaggcccagctaaccagtatttctgataat
ttgaattatcggcacaggaatgcccaaatggctagcagggcatcagtagagctccatact
gttattttcttcagaaagaaccccacagatacagaagctagaattttgaaaataagggcc
aatggcttcatcgtttttgtgcccaagtatggtattgaaggacctgtatacttgacatct
aaacgggagaagtcaggagaatggttggttgatgagcaggaacagaggatcaagaagttg
gatggcagtgttacctacggcattcttcaatctgtgagaattcatttggaagtggtagaa
cctcagcctaaccgcccagtcctccaaatgaccctcatctaa
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