Ipomoea triloba (trilobed morning glory): 116021834
Help
Entry
116021834 CDS
T07384
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03022
Basal transcription factors
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116021834
09124 Replication and repair
03420 Nucleotide excision repair
116021834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116021834
03400 DNA repair and recombination proteins [BR:
itr03400
]
116021834
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116021834
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116021834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
FUSC-like
GRAM
Motif
Other DBs
NCBI-GeneID:
116021834
NCBI-ProteinID:
XP_031118180
LinkDB
All DBs
Position
6:complement(18426770..18436494)
Genome browser
AA seq
606 aa
AA seq
DB search
MADKQVIKRAKYKSSVKDTGVPGVLKMTMEKFMFKPNDPKSSSKLNVEFRLIKGHKFTKE
GTSKQALLNLSQDQGKNYIFEFDSFSDRDACRDFVASAITSSGDSGKTAPAPAPAPNPTP
ESSAVPRDEQLSTAEMERRIKLLQEDSELQKLHKQFVIGGILSEGEFWAARKKLLDQSDA
KRPKQQVALKNHIWHKKPTIDGQPNRITFNLTPEIILQIFAEKPTVRQAYLNFVPKKMTE
KEFWTKYSRAEYLQGMKNAFAAAAAEAAEDEELAVFLKQDEILANEARKKIKRVDPTLDM
EADEGDDYIHLPDHGLPRTDTKETEDPQTEPYKRSFGQELNQHAAVVLRGRVVDELGDPK
SVAEALGTRKEVGEESDENFGKERSIRASRMAEIEDLQAPPEPPVAPLSIKDPRDYFDSQ
QANALKALGDSVAGNRQYKYSVSTEEAFSSLKEFITEINSQGLPEPIVSPEAAFKVFNAL
TQNISSTKYNLGKNPHDSVLDRLPNPIKDELLHHWTAIQELLKHFWSSYPITTKYFYTKV
TKLKDAMSQIYQKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYEADLQKRSAKSGA
RPNGLL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcggataagcaggtgattaagcgagctaagtacaagtcatcagtcaaggacactggc
gtccctggcgttttgaaaatgaccatggaaaagttcatgtttaagcccaatgacccgaag
tcatcatccaagcttaacgtggagtttagactgattaaaggccataaattcactaaagag
ggcaccagtaagcaggccttgcttaatctttcccaggatcagggtaaaaactatattttt
gagttcgacagtttctcagaccgtgatgcttgcagagactttgtggcatcagccatcaca
tctagtggagattctgggaaaactgcccctgcccctgcccctgcccctaaccctacccct
gaaagttctgctgttccaagagatgagcaacttagtacagctgaaatggagcgccgaatt
aaactacttcaggaggatagtgaattacagaaacttcacaagcaatttgttataggcggc
attttgtcagagggtgaattttgggcagcaagaaagaagctactagatcagagtgatgct
aagaggccaaagcaacaggtagctttgaaaaatcacatttggcataaaaaaccaaccatt
gatggtcagccaaacaggattacctttaacttgacacctgagatcattcttcagattttt
gcagagaaaccaactgttcgtcaggcatatcttaattttgttccaaaaaagatgacagaa
aaggagttctggacaaaatattcaagagctgaatatctccaaggcatgaaaaatgctttt
gctgctgctgcagccgaggcagctgaagatgaggagcttgctgtttttctgaaacaagat
gaaatcttggcaaatgaagctaggaaaaagattaaacgagtggatccaacattggacatg
gaagcagatgaaggcgatgattacattcatctgccagatcatgggcttcctcgtactgat
actaaagagactgaagatccgcaaactgagccatacaaaagatcttttggacaagagctc
aatcagcacgctgcagtggttcttcgaggcagagttgtagatgagttaggtgacccaaaa
tctgtagccgaagcacttggcactcgaaaagaggttggcgaagaatctgatgagaacttt
ggcaaagagcgctcaatacgggcatctcgaatggctgagattgaggatcttcaggcacct
ccagaacccccagttgccccactgtctatcaaggatcctcgagattactttgattcccaa
caagctaatgcactcaaggcacttggggattcagtagctggtaacagacaatataaatat
agtgtgagcactgaagaagcttttagctccttgaaggaatttatcacagaaatcaattca
cagggattaccagagccaatagtcagtccagaagcagcttttaaggtgttcaatgcactg
actcagaacatatcaagtaccaaatataatcttggaaaaaaccctcatgatagcgttttg
gataggttgccaaacccaatcaaggatgaactgctacatcactggacagctatccaggaa
ttattgaagcatttttggtcctcttatccaatcacaaccaaatacttttataccaaggtg
acaaaattgaaggatgcaatgtcccaaatatatcaaaagctacaggagatcaaggaatct
gtgcagtcagatttcagacatcaagtttcccttcttgtacagccaatgcttcaggcctta
gatgctgcttttgcgcattatgaagcagatttacagaagagatctgcaaaaagtggagca
aggccaaacggacttttgtag
DBGET
integrated database retrieval system
