Ipomoea triloba (trilobed morning glory): 116022223
Help
Entry
116022223 CDS
T07384
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116022223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116022223
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
116022223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_11
TPR_16
TPR_14
TPR_8
TPR_19
TPR_12
TPR_CcmH_CycH
TPR_7
TPR_9
ARM_TT21_C
TPR_15
DUF7795
Motif
Other DBs
NCBI-GeneID:
116022223
NCBI-ProteinID:
XP_031118705
LinkDB
All DBs
Position
1:complement(47941..61667)
Genome browser
AA seq
1187 aa
AA seq
DB search
MSGGEEVVSTTKQRELELEKSLESQPDNPCLHFDLGFLLWEKAASSTGGEEIREKAAEQF
LISAKLNPQNGDPFKYLAHYYANFSCDPQRALKCYQRAISLNPDDSDAGEAMCELLEESG
KENLGIAVCREATEKSPRAFWAFRRLGYLLVHQKKWTEAIPSLQHAIRGYPICADLWEAL
GLSYQQMGMFTAAVKSYGRAIELDESRVFALVESGNIFLILGNFRKGVEQFRQALLISPL
NVSAHYGLASALFCLAKECVSSGAFRWGASLLEEASKVAIACTSLAGNISCIWKLHGDIQ
LMYAKCFPWIDEGWSLQSDEKAFANSVHYWKRTCHVAAMTASRSYQRALHIAPWQANMYT
DVAIASELSFSFKESDKDYLNAWSLPEKMCLGGLLLEGSNNEFWVALGCLSDHAVLKQHA
FIRGLQLDVSLAVAWAYLGKLYRKEGERQLAQLAFDRARSIDPSLPLPWAGMSADADTRN
LKQDEAYECCLRAVQIFPLAEFQTGLTKLALHSGNLKSSEVFGAIQQALHRAPCYPESHN
LKGLVCEARHDYQSAIASYRLARYAAGIFDEKESKTYLNRISSNLARSLCRAGNANDAVD
ECEDLDKRGLLDVEGLQIYALCLWKLGKNNLALSVARKLATNVSSMDQSLVSTSVSFICR
LQYQISGQDAAILNLLKLPKGLSQTSKVILVASAIHALDHKNQLDSVISSARNSIASTEG
SAVMDFLVALGELLKHGSKGCLGFKKGLEYLRKSLHMSPNSHLIRNLLGYLLLLRKQWKD
FHASTRCIIVNPSDHPNEDDKKSALEIFGAEGVACHAFQCCKTSLATCRGKSTSGCNTMQ
LLQKHLHQEPWNQTTWYLLITNYFQRARQERYPHYLCVVLDRLIDVALSNELYSRKDPSF
QYQKFQLLLSAAEVSLQCGNYFNCIKNATSASELSIPDRYIFFAHLLLCRAYAVGDNPVK
LSEEYLKCLELKNGCHIGWICLKFLESQYKIQADSTVLALRFEECSKDVNTSWNVWLAIF
SLVQGLSAIWIGDFTRAEEYLSQACSLACDESCLLLCHGAICMELARQHCDSKFLSHAIR
SLKKAKDATPIPMPFISLLLAQAEASLGSESKWEKNLHEEWSSWPPEMKPAELLFQMHLV
SRHSQCGTYDDSSLEPCADSIRQMLQAIHLNPSSSRYWRVLRSSLSN
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaggagaagaagttgttagtactacaaaacagagggagctagagcttgagaaa
agtctagagtcccagccagacaatccttgtctccattttgatctgggtttccttctatgg
gagaaggcagccagcagcacaggaggtgaagagatcagggagaaagctgccgagcaattt
ctgatatctgcaaaactcaaccctcagaatggggatccctttaagtatctggctcattat
tatgccaacttctcatgtgacccgcagagggctctgaagtgctaccagcgagccatttct
ctcaaccctgatgattctgatgctggggaagcaatgtgtgaactactggaggaaagtgga
aaggagaacttggggatagctgtctgccgagaagccacggagaagtcaccccgtgccttt
tgggctttccgaagattgggttaccttctggtccatcaaaaaaaatggactgaagcaata
ccaagtcttcagcatgctatccgaggctatcccatatgtgctgatttgtgggaggccctc
ggtctttcctaccagcagatgggtatgttcactgctgctgttaagtcatatggacgagct
attgagttagatgaatcaagagtttttgcattggttgaaagtgggaatatatttttgata
cttggcaactttaggaagggagttgagcagttccgtcaagctttactaatctcacctcta
aatgtatctgcacattatggccttgcgtctgcgcttttttgtttggcaaaggagtgcgta
agttcaggcgcatttaggtggggagcttcattattagaggaggcatctaaagtggctata
gcatgcacatcattagctggtaatatttcatgcatatggaagctgcatggagacattcag
ctcatgtatgcaaaatgtttcccatggattgatgaaggatggagcttacaatctgatgag
aaagctttcgctaattcagtccattactggaagagaacctgccatgtggctgctatgaca
gccagtcgctcttatcaaagggctttacatatcgctccttggcaagctaacatgtatact
gatgttgctattgcatcagagctcagtttctctttcaaggagagtgataaagattattta
aatgcttggtctctgcctgagaagatgtgccttggggggttattgcttgagggtagcaat
aatgagttttgggtggctttgggatgtttatcagatcatgcagtgttgaaacaacatgct
tttataagaggcttgcagctggatgtgtctctggctgttgcatgggcataccttgggaag
ctgtataggaaagagggtgaacgacaattggcgcaacttgcatttgatcgtgcgagaagt
attgatccttcacttccgttgccgtgggctggcatgtcagctgatgctgatacaaggaat
ctgaaacaagatgaggcatatgagtgctgtctacgagctgttcagatttttcctcttgct
gagtttcaaactggtctgacaaagcttgctctacattctggtaacctgaagtcttcagag
gtatttggagccatccagcaagcattgcaccgtgccccgtgttatcctgaatctcataac
ttgaaagggctagtttgtgaggcaagacatgattatcaaagtgctattgcatcatataga
ctagcccgctatgcagctggcatatttgatgaaaaagaatcaaagacctatctcaaccgt
atatcatctaacctagccagatcactttgtagggctgggaatgctaatgatgctgttgat
gagtgtgaagatttggacaaaagaggtcttcttgatgtagaaggtttgcagatttatgca
ctgtgcttatggaaactcggaaaaaataatctggctttatcagtggcaagaaaacttgcc
acaaatgtttcgtctatggatcagtcattggtgtccacatctgttagtttcatctgtaga
ttgcaatatcagatttcgggccaggatgctgccattttaaacttattgaaactccccaag
ggattatcacagacttcaaaagttattcttgtagcgtctgctattcatgcattagatcat
aagaatcagcttgattcagttatttcaagtgctcgcaactctattgcttcaactgaaggg
tcagctgtaatggattttctagtggcactgggtgaactattgaaacatggatctaaaggt
tgccttgggtttaagaagggacttgagtacttgagaaaatcacttcacatgtctcccaat
agtcacttgataaggaatcttcttggttatcttttgttattaaggaagcaatggaaagat
tttcatgcttcaactagatgcattattgtgaacccttctgaccatccgaatgaagatgat
aaaaaatctgcacttgagatttttggtgcagagggagtagcttgccatgccttccaatgc
tgcaaaacatcactggccacctgcagagggaaatctacatctggatgtaacactatgcag
ctgttacagaagcatttgcatcaagagccatggaaccaaactacatggtacttgctcata
actaactattttcagagggctcgccaggagagatatcctcattatctatgtgttgtgctt
gatcggctaatagatgttgccctttctaatgaattgtattcaagaaaggacccttctttt
cagtatcagaagttccagctcttacttagtgcagctgaggtcagtttgcaatgtgggaat
tattttaactgcataaagaatgctacaagtgcttcagagctatccatacccgatcgctat
atcttctttgcccacttacttctatgccgtgcatatgctgtgggagataatcctgttaaa
ttgtctgaagaatatctaaaatgcttggagcttaaaaatggttgccatattggttggatc
tgcctcaagtttcttgaatctcagtacaaaatacaggcagattccactgtgttagcgtta
agatttgaggagtgctccaaagatgtaaatacttcatggaatgtctggctagctatattc
agcttagtgcaaggtctaagtgcaatttggataggagatttcacaagagcagaagaatat
ctttcacaagcttgctcgttagcctgtgacgagagctgcttactgctttgtcatggtgct
atttgtatggagcttgccaggcagcattgtgattcaaagtttctgtcacatgcaattaga
agtctaaagaaagctaaagatgctactccaattccaatgccttttatctcactattgttg
gcgcaagcagaagcaagccttggctctgaatcaaagtgggagaaaaaccttcatgaggaa
tggtcatcttggccaccagaaatgaagcctgctgaactcttattccaaatgcatttggtt
tcaagacattcacaatgtggtacttatgacgactcatcattggagccttgtgcagattct
ataagacagatgctccaagctatccatttgaacccatcttcttctaggtactggagagta
ttgagaagttcattaagcaactaa
DBGET
integrated database retrieval system
