Ipomoea triloba (trilobed morning glory): 116022247
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Entry
116022247 CDS
T07384
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116022247
09123 Folding, sorting and degradation
03018 RNA degradation
116022247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116022247
03041 Spliceosome [BR:
itr03041
]
116022247
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116022247
mRNA cycle factors
Stress granule specific factors
116022247
Spliceosome [BR:
itr03041
]
Complex C
Other components
Complex C specific factors
116022247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RBD_DEAH11
RRM_7
RRM_Nup35
RRM_RdRP1_2
YflT
RRM_MARF1
TEX47
DUF4441
Motif
Other DBs
NCBI-GeneID:
116022247
NCBI-ProteinID:
XP_031118736
LinkDB
All DBs
Position
6:complement(24249437..24253362)
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AA seq
670 aa
AA seq
DB search
MAQIQVQHQSPAMGANGLAAAPSAGGVAAAAATAAVVAPGGVVGNQFLSTSLYVGDLDPN
VSDSQLYDLFNQVGQVVSVRVCRDMSTRRSLGYGYVNYTNPQDAARAMEMLNFTSMNNKS
IRIMYSHRDPSLRKSGTANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGY
GFVQFVNEESAQNAIDKLNGMLMNDKQVYVGHFLRKQEREPAISKIKFNNVYVKNLSEST
TDDDLKKVFGEFGNITSSVVMRDADGKSKCFGFVNFENADDAAKAVDALNGKRFDDKEWY
VGKAQKKSEREQELKSKFEQVAKETVDKYQGLNLYVKNLDDSIDDDKLKELFAEYGTIKS
CKVMRDASGISRGSGFVAFSAPEEASRALSEMIGKMVVSKPLYVALAQRKEERRARLQAQ
FSQMRPVAMAPSLGPRMPMYPPGAPGIGQQLFYGSAPPAIIPPQAGFGYQQQLVPGMRPG
GGPMPNFFVPMVQQGQQAQRQGGRRGAGPGQQAQQPMPLMQQQMLPRGRMYRFPPGRNVP
EVPVPGVAGGMLSVPYDMGGILPRDATMGQPVPITALASALANAPPEQQRTMLGENLYPL
VDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVQQQASSPADQLA
SLSLNENLVS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattcaagtgcagcatcagagtccggcgatgggagccaacggattggcagca
gcgccgagtgccggcggcgtggcagccgccgccgccactgccgcggttgtggctcccggt
ggcgtcgtcggcaatcagttcctgtcgacttcgctttacgttggtgacctggaccccaac
gtgtcggactcgcagctctacgatctgttcaaccaggtcggacaggttgtgtcagttagg
gtttgtcgcgacatgagcacgcgccgttccctcggctatggatacgtcaactataccaac
cctcaggatgctgcaagggcaatggagatgttgaacttcacttctatgaataataagtct
attaggatcatgtattctcatcgtgatcctagtctccgtaagagtggaactgctaatata
tttattaagaatttggacaaatcaattgacaacaaagccttacatgacaccttttctagt
tttggtaacattctttcatgcaaaatagctactgattctaatgggcagtctaaaggctat
ggttttgtacaatttgtcaatgaagagtcggctcaaaatgctattgacaagttaaatgga
atgctcatgaatgacaagcaagtatatgttggacattttcttcgtaaacaagaaagagag
cctgcaataagcaagataaaattcaacaatgtttatgtgaagaacctatcagaatccacc
acagatgatgatctgaagaaagtttttggcgagtttgggaatattactagttcagtagtt
atgagagatgctgatggaaagtccaaatgttttgggtttgttaattttgagaatgcagat
gatgctgctaaggctgttgatgcgttaaatgggaagagatttgatgataaagagtggtat
gttgggaaagctcaaaaaaaatctgaaagggaacaagaactaaaaagtaagtttgagcag
gttgcaaaggaaacagtcgataaatatcaaggattaaatttgtatgtaaaaaatttggat
gatagtattgatgatgacaagcttaaggagctgttcgcagagtatggtaccattaaatca
tgcaaggttatgcgtgatgcaagtggaattagcagagggtcaggttttgttgccttctca
gctccagaggaagcctctagagctctttctgagatgattggaaaaatggtagtgagcaaa
ccactctatgttgcacttgctcaacggaaagaggagaggcgagcaaggttgcaggcacag
ttttctcagatgcgaccagttgcaatggcaccctctcttggtcctcgtatgcctatgtat
cctcctggagcaccaggtattgggcagcagctcttctatgggtcagctccacctgccata
attcctccccaggctggatttggctaccaacaacagcttgttcctggaatgcgtcccggg
ggaggtcctatgccaaatttctttgtgccaatggtccagcagggtcaacaagcccaacgt
caaggtggcaggcgtggagcaggacctggccaacaagctcagcagcctatgccattgatg
caacagcagatgcttccaaggggtagaatgtaccggtttccacctggccgcaatgtacca
gaggttcctgtgcctggtgtggctggtggtatgctttctgttccatatgatatgggtgga
atccttcctcgagatgctactatgggacagccggtgccaattacagcacttgctagtgcc
cttgctaacgcaccacctgaacaacagagaactatgttaggtgaaaatctgtacccgctt
gttgatcagttggagcatgagcatgctgcaaaagtgactggcatgctgctcgagatggac
cagaccgaggttttgcatctactcgaatcaccagaggctttaaagtccaaagttgccgag
gctatggatgttttgaggaacgttcagcagcaggcaagcagccctgctgatcaactcgcc
tctctttctctcaacgaaaaccttgtttcctag
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