Ipomoea triloba (trilobed morning glory): 116022280
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Entry
116022280 CDS
T07384
Name
(RefSeq) protein PAT1 homolog 2-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116022280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116022280
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116022280
mRNA degradation factors
5'-3' decay
Decapping complex
116022280
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
116022280
NCBI-ProteinID:
XP_031118775
LinkDB
All DBs
Position
6:22352478..22357196
Genome browser
AA seq
817 aa
AA seq
DB search
MERSSGRDFKDFTDSSSSASDSGVFNASQYAFFGRDIAEEIELGGLEDEEVREDASSTGA
PVAGGFGGGEDGVHEYHLFEKEEGSGIGSLSDLDDLATTFLKLNRVVAGPRHPGVIGDRG
SGSFSRESSSTADWAKDADLPDWLDQHFSDTECYRETKRWSSQPHLSSIHLSESKPLYRT
SSYPEQQPQQLQHCSSEPISVPKSAFTSFPPGGRSQQGSPRGFSQHLNISSLGHQSPFSA
TNLSSLSNSNAHLSGFPHGLQYGNMPQLTSPGFSVNNHLQNSWANHSNLYHDDHSSLSNN
SLPHQFLQHNVLFSPQLMSSQQRRLHLSAQASLPHFPVMRSQLHNSLSAPSHLGKYVLSD
VKDSRPKSHKGKSVRFAQQGPDSGSQKNESSVLQFKSKYMTGEEIEHILKMQHAGTHCND
PYIDDYYHQARLAKKAAESRTKYRLCPNKEQPSRSRNSTELLPHLRVDSQGRVSFSSIRR
PSSLLEANPPGSSVCGSSEQKVQETPLEQDPKFAARITIEDSFYLLLEVDDIDRLLQFSQ
PQDGGAQLRRKRQMLLEGMAASLQLVDPLGKTSGPSELSPRDDIVFLWLVSIPKGQKLIS
RYLQLLIPGGDLARIVCMAIFRHLRFLFGGLSCEHGAGETISNLAKTVSTCVSGMDLNSL
SACLAAVVCSSEQPPLRPLGSPAGDGASLILKSVLERASYLLTDPQAANSFSMPNPALWQ
ASFDAFFKLLTKYCVSKFDNIMQAVAQTETSTDVISPEVGRAINREMPVELLRASLPHTN
ELQRKMLMNFGQGSIPLAGFNSRGGSSRKINAESVSC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggagagatcctctggacgggatttcaaggacttcaccgactcatctagttccgcttct
gatagtggagttttcaacgcttctcaatatgccttcttcgggcgggacattgcggaggaa
attgagttgggcggtttagaggatgaggaggtgcgggaggatgctagtagtaccggtgct
cctgttgccggaggatttggcggtggcgaggatggggtgcatgagtatcacttatttgag
aaagaagagggatctggaataggatctttatctgatttagatgacctagcaacaaccttt
ttgaagttgaacagagttgttgcaggtccaagacatcctggggttattggtgaccgtgga
tcgggatctttttcaagggaaagttcatctacagctgactgggcaaaagatgctgatctt
cctgactggcttgatcaacatttctctgatactgaatgttacagggaaaccaaaagatgg
tcttctcagccacacctctcttctatacatctttcggagtcaaaaccactttatagaaca
tcttcatatcctgagcagcaaccacagcagctacaacactgctccagtgaacctatttca
gtaccaaaatctgctttcacttcctttcctcctggtggcagatctcaacagggttcaccg
cgtggcttttcccaacaccttaatatttcctcacttgggcatcagtcaccattctctgct
acaaatttgtcttctctgtcaaattctaatgcgcatctgtctgggtttcctcatgggctt
cagtatggaaatatgccccaattaacctctcctggtttctctgtaaataaccacctacaa
aacagttgggccaaccattcaaacctatatcatgatgatcattctagcctctcaaacaac
agtttgccacatcaattcctgcaacacaatgtgctattttcacctcagttgatgtcctcc
cagcagcgaagactacatctttctgctcaagcatctcttccccattttccagtaatgcgg
tcccaattgcataattctctttctgcaccatctcacctgggtaaatatgtactatctgat
gtgaaagattcgagacctaaatcacataaaggtaaaagtgtgagatttgctcaacaaggc
cctgattcaggtagccagaagaatgaaagtagtgtcttgcagttcaaatccaagtatatg
acaggtgaagaaatagaacatattctcaaaatgcagcatgctggaactcattgcaatgat
ccatatatagatgattattaccaccaagctcgacttgctaagaaggcagctgagtcgaga
acaaaatatcgtctctgtccaaacaaggagcaaccttcacggtctcgtaatagcacagag
ttactgcctcatctacgtgttgattctcaaggacgggtttccttttcttccattcgtagg
ccgagctctcttcttgaagccaatccaccaggctcttctgtttgtggcagtagtgagcag
aaagtacaagagacccctttggagcaggaccctaagtttgctgctagaattacaatagag
gatagtttctatcttcttcttgaggttgatgacattgaccggcttcttcaatttagtcag
ccacaagatggaggtgctcagcttaggcgaaagaggcagatgcttctggaaggtatggcg
gcttcacttcaacttgttgacccacttggaaaaactagcggcccatctgagctgagtcca
agggatgacattgtgtttctatggttggtctctattcccaagggccagaaactcatttca
agataccttcagcttctcattcctggtggagatcttgctaggattgtttgcatggcaatt
tttcgtcatctaaggtttttatttggtggtctatcatgtgagcatggggcaggtgagacc
atttctaatcttgcaaagacagtgtcaacctgtgtcagtggtatggatcttaattcactt
agtgcttgtctagctgctgtagtatgttcctcagagcaaccacctctccgcccacttgga
agccctgctggggatggggcctcgctcatcttaaaatctgttctagaaagggcatcttac
ctgttaactgatcctcaggctgcaaacagcttcagcatgcctaaccctgccctatggcag
gcatcatttgatgcctttttcaaacttcttacgaaatattgtgttagtaaatttgataat
ataatgcaagcagttgcacagacagaaacaagcacagacgtaattagtccagaggtaggg
agggccataaacagagaaatgcctgtggaacttttacgtgctagtcttccccacacaaat
gagctccagaggaagatgttaatgaattttggccagggttccatacctcttgcaggattc
aactctcgtggtggaagcagcagaaaaataaatgccgagtctgtgagctgttag
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