Ipomoea triloba (trilobed morning glory): 116022334
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Entry
116022334 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116022334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116022334
03012 Translation factors [BR:
itr03012
]
116022334
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116022334
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116022334
Translation factors [BR:
itr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116022334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
AAA_16
AAA_30
PhoH
Motif
Other DBs
NCBI-GeneID:
116022334
NCBI-ProteinID:
XP_031118851
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All DBs
Position
6:complement(16344633..16357885)
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AA seq
1188 aa
AA seq
DB search
MAYSNLIHNCSRLRLRAIPLMAAATTTSVSLQLYRRFHLNKSPFLLRTTRPPHRLHSCGF
CCSAAIIRRRNRNASSPFTLPYIYQQNFGFGRLAYPEYPSESESDREFEPESKQLNDSTL
GNIEEWRWKLTMLLRNENEQEVISREKKDRRDFGHLSALATRMGLHCCQFDKVVVFSKVP
LPNYRPDLDAKRPQREVVLPHGLQDRVNALLKAYCSKKSINNTSSEYNYFSRSSNDQKFS
NDNELCENEKPPSRNIVAERILRRRSLDMQYKQQNWQESLEGQKMIEFRRSLPAYKERES
LLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRISAMAVSER
VAAERGENLGESVGYKVRLEGMKGRDTRLLFCTTGILLRRLLVDRNLEGVTHVIVDEIHE
RGMNEDFLLIVLKDLLHRRPELRLILMSATLNAELFSSYFGGAPRIHIPGFTYPVRSHFL
ENILEMTGYRLTPYNQIDNYGQDKMWKMQKQTLRKRKTQIASAVEDALETASFREYSPRT
RESLSCWNPDSIGFNLIEHVLCHICRRERPGAVLVFMTGWDDINALKDQLQANPLLGDSS
RVLLLACHGSMASTEQRLIFDKPEDGVRKIVLATNMAETSITINDVVFVLDCGKAKETSY
DALNNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVHDTFAEYQMPELLRTPLQ
SLCLQIKSLQLGSISEFLSKALQPPESLSVQNAIEYLKMIGAFDEDENLTLLGRNLSMLP
VEPKLGKMLILGSIFNCLDPIMTIVAGLSLRDPFLMPFDKKDLAESAKAQFSARDFSDHL
TLFRAYEGWKDAERNQSGYEYCWKNFLSLQTLKAIDSLRKQFFHLLKDSGLVSGESCNIW
SHDEHLVRAIVCAGLFPGICSVVNKEKSISLKTMEDGPVLLYSNSVNGLEPRIPYPWLVF
NEKVKVNAVFLRDSTAVSDSMVILFGGNITKGSANGHLKMLGGYLEFFMNPTIATTYVRL
KRELYELIHEKLLNPKLNLGDHDELISAVRMLVSEDQCEGRFVFGRQMPSSAIKSRKDAE
AGMVSSKGNGGDNPKSHLQTLLVRAGHQSPSYKTTQLKHNKFRAVVMFNGLDFVGQPCGS
KKEAEKAAAAEALQWLTGETQSSQKTVEHMSAILKKSKKKQLHASRWR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggcctactctaaccttatacacaattgcagcagattaaggctaagggccattccacta
atggccgccgccaccactacctccgtctctcttcagctgtaccgccgcttccatttaaat
aaatccccttttcttctccgcaccacaaggccgccccaccgcttgcatagctgcgggttc
tgttgttctgcggccatcatacgtaggcggaacaggaatgcgtcctctcctttcactttg
ccgtatatttatcagcagaatttcgggtttggccggcttgcgtaccccgagtacccttca
gagtctgagtctgatagggaatttgagcccgagtctaagcagttgaatgattcaaccctt
ggtaacattgaagagtggagatggaagttaaccatgctattgcgtaatgaaaatgaacaa
gaagtgatctccagagagaaaaaggatcgtcgtgattttgggcatctatcagcactagca
accagaatgggtttacattgttgtcaatttgataaagtagttgtctttagtaaagttcca
ttaccaaattacagaccagatctggatgctaagcgtccacagagggaggtggtcttacct
catggactgcaagatcgtgtaaatgctcttctgaaagcatactgttctaaaaagtctatc
aataacacaagctcagaatataattacttttcaagatctagcaatgaccagaaattttca
aatgacaatgaactttgtgagaatgagaagcccccttcacgaaatatcgttgctgagaga
atccttcggcggaggagcttggacatgcaatataaacaacaaaattggcaggaatctcta
gaaggtcaaaagatgatagaatttcgaaggagtcttcctgcatataaagagagggaatca
ttattaaatgcgatttctcagaatcaggtcgtggtcgtgtctggtgaaactggatgtggt
aaaaccacccaactgcctcaatatatcttagaatccgagattgaagctgctcgtggagct
acctgcagtattatttgtactcaacctcggcgaatatctgctatggcagtttcagaaaga
gttgctgcagagcgcggtgagaatttgggagaatctgttggttataaagttcggcttgag
gggatgaaagggagggatacacgtcttctgttttgcactactggaatccttttaaggaga
ttgcttgttgatcggaatttagagggtgttacccatgttatcgttgatgagattcatgaa
cgtggaatgaatgaagatttccttttaattgttctcaaagacctccttcatcgccggcca
gaattgaggttgattttgatgagtgcaacactaaatgctgagcttttctcctcatatttt
ggtggtgctcctaggattcacattcctggttttacttatccagttcggagtcatttccta
gagaatattttggaaatgactgggtatcgattgactccatataatcagattgataattat
ggtcaagataagatgtggaaaatgcagaaacaaactcttaggaagaggaaaacacaaatt
gcttcagctgtagaggatgcacttgaaactgcaagttttagggagtatagtcctaggact
cgggaatcattatcgtgctggaatccagattcaattggctttaacctcattgagcatgtt
ctttgccatatatgtagaagagaaaggcctggagctgttttggtatttatgaccggttgg
gatgacataaatgctctaaaggatcagctccaagcaaatccactattgggagattccagt
agagttttgttgcttgcttgtcatggttctatggccagcacagagcagagacttattttt
gataagcctgaagatggagtgaggaagatagtgctagccaccaatatggctgaaacaagc
atcaccataaatgatgtagtctttgtgctagactgtggaaaggcaaaagagacatcttat
gacgcactcaataacactccatgtttgcttccttcttggatttcaaaagcttctgctcgg
caaagaaaaggaagggctggtcgtgttcaacctggggagtgctatcatctctatcctaga
tgtgtgcatgatacttttgcagaatatcaaatgccagagcttttgagaacgccacttcag
tctttatgtctgcaaattaaaagtttacaacttggaagtatttcagaatttctgtctaag
gctttgcagccaccagaatctttatctgttcaaaatgccattgagtatttgaagatgatt
ggtgcgtttgatgaagatgaaaatcttacacttcttggacgcaacttgtcaatgcttcca
gttgaaccaaaacttggaaaaatgctcatactaggttcaatttttaactgccttgatcct
ataatgactattgttgctggcctaagtttacgagatccattcttgatgccatttgacaag
aaagatcttgcagaatcagcaaaagcccagttttctgctcgtgacttcagtgaccacctc
actcttttccgagcttatgaaggttggaaagatgctgagaggaaccaatctggttatgaa
tactgttggaagaattttctttctctacaaactctaaaagctattgattccctaaggaag
caatttttccaccttcttaaggactctggcttagtaagtggggaaagttgcaatatatgg
agccatgatgaacatcttgttcgagcaattgtctgtgcgggtctatttcctggaatatgc
tcggttgtgaacaaggagaagtcaatatcattgaaaacaatggaggatggaccggttctc
ttgtattcgaactctgtgaatggcctagaacctagaattccatacccgtggctcgtgttc
aatgaaaaagtgaaagttaatgcagtcttcctccgtgattctacagccgtttcagattct
atggttatcttatttggtggaaatattacaaaaggcagtgctaacgggcacttaaaaatg
ctgggaggatacttggagtttttcatgaatcccactatagcaaccacatatgtaaggttg
aagagagaactttacgaactaatccatgaaaagcttctgaatcctaagttaaacctagga
gatcatgatgagctcatatcagcagtaagaatgctggtttcagaggatcaatgtgaaggt
cgatttgtgtttgggcgtcagatgccatcatctgccatcaagtctagaaaagatgcagaa
gcaggcatggtttcgagtaagggtaatggcggtgataatccaaagtctcatctccaaacg
ctgcttgtccgagccggacatcaatctcccagttacaagacaacacaactaaaacacaat
aaatttcgagctgttgtaatgttcaatggtttggattttgttgggcagccttgcggtagt
aagaaagaagcagaaaaggctgctgctgccgaagctttgcagtggttgactggtgagacc
cagtcgtcccagaagaccgttgaacacatgtctgcaattctaaagaaaagcaaaaagaaa
caacttcatgcttcaaggtggaggtga
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