Ipomoea triloba (trilobed morning glory): 116022532
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Entry
116022532 CDS
T07384
Name
(RefSeq) THO complex subunit 5B-like
KO
K13174
THO complex subunit 5
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03013
Nucleocytoplasmic transport
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116022532
09122 Translation
03013 Nucleocytoplasmic transport
116022532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116022532
03041 Spliceosome [BR:
itr03041
]
116022532
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116022532
Spliceosome [BR:
itr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116022532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
116022532
NCBI-ProteinID:
XP_031119126
LinkDB
All DBs
Position
6:complement(24154678..24159503)
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AA seq
813 aa
AA seq
DB search
MDATMAEPGEILPERKPEKSPYEVLRQSKASVEEIVSKMLSLKKEGKQKSELRELATQIF
LNFVTLRQANRSILLEEDRIKAETERAKAPVDFTTLQLHNLMYEKSHYLKAIKACKDFKS
KYPDIELVPEEEFFRDAPEEIKSSVMSNDSTHNLMLQRLNFELHQRKELCELREKLEQQK
KTLQGIIANRKKFLLSLPSHLKSLKKASLPVQNQLGVQHTKKLKQLHSAELLPPPLYVIY
SQLLAQKEAFEENIEMEIIGSVKDAQAVARQQATKDTAKTTSVDSSKLDEDVPDEEDDGQ
RRRKRPRKVPSKESLDHSGIYQAHPLKVILHVHDDETPSTPTKLVTLKFEYLMKLNVVCV
GVDGSQEDMGNDILCNLFPDDTGLELPHQSAKMIGNSVEFDGTRTLRPYKWAQHLAGIDF
LPEVSPLLGGSESSNEETAKQSTVISGLSLYRQQNRLQTVVQRLRARKKARLALAEQFDS
LMKLEWPVITCKSVPWTSHNPRCSLHGWSSLGSACNEASSVPAVDAEKVQGPDVSMEVRS
DTSKEEVENTREDGELPSLTLATAGVHDATPTPTRGTNSDHSRKLGFISKCVISPLNKGK
SPSFKKHEEDLDLIMESDSELDEPAQVEQDTDSIPGSTVPYVDDKSWADCRVEDYILVLT
RKTHDGEKTMRLEAQVKISMEYPLRPPLLRLRLYASHHEESYCEVDYSEWYNELRAMEAE
VNVHIMKTITPDQENNILAHQVHCLGMLFDFYVDDRATCDRATCSEKRMSTSVIDVGLCK
PVGGQLVARSFRGRDRRKMISWKDNTCTPGYPY
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atggacgctacgatggctgagccaggcgaaatactgccggagcggaagccggagaagtct
ccgtacgaagttcttcggcagagcaaagcttcggtggaggagatcgtttcaaagatgctc
tcactgaagaaggaaggcaagcaaaaatccgagctccgagagctcgcgactcagattttt
ctcaacttcgttactctccgccaggcaaaccgttccatattgcttgaggaagatcgaata
aaagcagaaacagagcgtgcaaaagcaccagtggacttcacaacactgcagcttcacaac
ttaatgtatgaaaaaagtcactatttgaaagctataaaagcttgcaaagatttcaagtca
aagtatcctgatattgaacttgttcctgaggaagagttctttagagatgcaccagaggag
attaaaagttctgtgatgtcaaatgacagcacacacaatttgatgctccagagactcaac
tttgaactacaccagcgcaaagaactatgtgaattgcgtgagaaactggaacagcaaaag
aagacacttcaggggatcatagccaacagaaaaaaattcttgttgagcctcccatcacat
ctgaagtcacttaagaaagcatccttgccggttcagaatcaactaggagttcagcacaca
aagaaattaaagcaactgcattctgcagaattgcttcccccgcctctctatgttatatat
tcacagttactggcccagaaagaagcctttgaagagaatatagagatggagattattggg
agtgtgaaagatgctcaagctgttgcccgccagcaggcgactaaagacactgctaaaact
accagtgttgatagttccaagttagatgaggatgtgcctgatgaggaagatgatggacaa
aggagaagaaaacgtcctaggaaggttccaagcaaggagagtttagatcactcaggaata
tatcaagcgcaccctcttaaagtcatccttcatgttcatgatgatgagactccttcaaca
cccacaaaacttgtaactcttaaattcgaatacttgatgaagttgaatgtggtatgtgtt
ggagtggatggttcacaagaggatatgggcaatgacattttgtgcaatttgtttcctgat
gatactggcctagagcttcctcatcagtcagccaagatgattggcaattcggttgaattt
gatggaacaagaactttgcggccttacaagtgggcccagcatcttgcagggattgatttt
ttgccagaggtgtcaccattgctaggtggctctgaaagctcaaatgaagaaacagctaag
cagtctactgttatatctggtctgtcactgtatcgtcagcagaatcgattgcaaacagtt
gtgcaaagacttcgtgctagaaaaaaggctcgactggctcttgcggagcagtttgattct
ctaatgaagttggaatggccagttatcacctgtaaaagtgtgccatggacctcacataac
cctcgttgcagtttgcatggctggtcatctcttggttcagcatgcaatgaagcatcgtca
gttcctgctgtggatgcagaaaaggtccagggtcctgatgtttcaatggaggtaagatct
gatacttcaaaggaagaggttgaaaacacaagagaggatggggaacttccgtccttaact
ttggctactgctggagtacatgatgctactcccacaccaactagaggaactaattctgat
cattccagaaagcttggtttcatttcaaagtgtgttatatctccccttaacaagggaaag
tctccaagttttaagaaacatgaggaggatttggaccttataatggaatctgatagcgaa
ctggatgaaccagctcaagtagaacaggacactgatagcattcctggaagtacagtgcct
tatgtagatgacaagtcatgggctgattgcagggttgaggactatattcttgtcttaact
agaaagactcatgatggtgaaaagaccatgagattagaagcccaggttaaaattagcatg
gagtatcctcttaggccacctcttcttagactgagactttatgcttcacatcatgaagag
agctattgcgaggtagattactctgagtggtataatgaactccgtgccatggaggcagag
gtaaatgttcacataatgaaaacaattaccccagaccaagaaaataacatcttagctcat
caagtccattgtcttggtatgctgtttgacttttacgtggatgacagggcaacctgcgac
agggcaacctgctctgagaaaagaatgagtacttctgtaattgatgttggtctgtgcaaa
cctgtcggtggtcagcttgttgccagatctttccgaggtagggaccgaagaaaaatgatc
tcatggaaagacaatacatgcacacctggttatccttattag
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