KEGG   Ipomoea triloba (trilobed morning glory): 116022592
Entry
116022592         CDS       T07384                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
itr  Ipomoea triloba (trilobed morning glory)
Pathway
itr03030  DNA replication
itr03410  Base excision repair
itr03420  Nucleotide excision repair
itr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:itr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116022592
   03410 Base excision repair
    116022592
   03420 Nucleotide excision repair
    116022592
   03430 Mismatch repair
    116022592
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:itr03032]
    116022592
   03036 Chromosome and associated proteins [BR:itr03036]
    116022592
   03400 DNA repair and recombination proteins [BR:itr03400]
    116022592
DNA replication proteins [BR:itr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    116022592
  DNA Replication Termination Factors
   ELG1-RFC complex
    116022592
Chromosome and associated proteins [BR:itr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    116022592
DNA repair and recombination proteins [BR:itr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     116022592
  Check point factors
   HRAD17(Rad24)-RFC complex
    116022592
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_16 AAA_assoc_2 AAA_11 DUF815 AAA_5 AAA_22 RuvB_N ATPase_2 AAA_14 AAA_30 AAA_7 DNAX_ATPase_lid AAA_3 AAA_19 AAA_24 ResIII bpMoxR nSTAND3 IstB_IS21 Mg_chelatase AAA_28 ABC_tran RNA_helicase TniB AAA_18 VESA1_N AAA_25
Other DBs
NCBI-GeneID: 116022592
NCBI-ProteinID: XP_031119213
LinkDB
Position
6:17556073..17563688
AA seq 361 aa
MAEVISIMDIDDDQNEGNISSNLNKGKNIVVSVATKATPWVEKYRPQSLSDVAAHKDIVE
TIDRLASSNRLPHLLLYGPPGTGKTSTILAMARKLYGAQMQNMVLELNASDDRGIDVVRQ
QIQDFASTQSISFGAKFAVKLVLLDESDAMTKDAQFALRRVIEKYTRNTRFALICNNVNK
VIPALQSRCTRFRFPPLDAVHVTERLKHVIESERLDVPESGLKALVQLSNGDMRKALNIL
QSTHMASQQITEEAVYLCTGHPLPKDIEQISYWLLNEPFAVGYKRILETKTRKGLALVDI
VREVTMFVFKIKMPSDVRIQLINAMADIEYRLTFGCNDKLQLGSLIAAFTQARSALVAAA
K
NT seq 1086 nt   +upstreamnt  +downstreamnt
atggcggaggtgatatccattatggacattgacgatgaccaaaatgagggcaacatcagt
tcaaaccttaacaagggcaaaaacatcgtcgtctctgtcgccaccaaagccacgccttgg
gttgaaaaatatcgtcctcagtccctctctgacgtcgctgcccataaggacatcgtcgaa
accattgacaggcttgcgagtagcaacaggctaccgcatctgctgctgtatgggcctccc
ggaactgggaagacctccacaattctcgccatggctcggaagctttatggagcacagatg
caaaatatggttttagagttgaatgcttctgatgatcgtgggattgatgttgtgaggcag
cagattcaggactttgctagtactcaaagcatctcctttggtgcgaagtttgctgtgaag
ttagtgctgttggatgagtcagatgccatgacaaaggatgcacagtttgctctgcgtcga
gtaattgagaaatacacaagaaatactcggtttgcactgatttgcaacaatgtcaacaag
gtgatccctgcattacaatcacggtgtacacggttccggtttccacctcttgatgctgtt
catgtaactgagaggcttaaacatgttattgaatcggaaagacttgatgtaccagagagt
ggcttgaaggcactggtgcagcttagcaatggtgacatgagaaaggctttgaacattttg
cagtcaacgcatatggcctctcagcagataacagaagaggctgtctatttatgcactggg
catccattgcccaaagacatagagcaaatctcatactggcttctaaatgagccctttgct
gtcggttataaacgaatattggaaactaaaacaaggaaaggattggctttggtagatatt
gtacgagaagtgaccatgtttgtcttcaagataaagatgccatcagatgtgcgtattcag
cttatcaatgctatggctgatattgaatataggttgaccttcggttgcaacgataagttg
cagcttggatcattgatagccgcttttacgcaagcacggtctgctctggttgctgctgca
aagtag

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