Ipomoea triloba (trilobed morning glory): 116022681
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Entry
116022681 CDS
T07384
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116022681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116022681
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116022681
mRNA degradation factors
5'-3' decay
Lsm complex
116022681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
116022681
NCBI-ProteinID:
XP_031119357
LinkDB
All DBs
Position
6:20754479..20757285
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AA seq
128 aa
AA seq
DB search
MSWASPEDIHLSTSLASYLDKKLLVLLRDSRKLLGTLRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYIIRGENVVLIGELDLDKEELPPHMTRVSEAEIKRAQKAEREATDLKGTMRK
RMEFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctagtccggaagatatccacctctccacttctcttgccagctatcttgac
aagaaacttcttgtgttgctgcgagatagtcggaagcttttgggcacacttagatctttt
gaccaatttgcaaatgctgttcttgaaggtgcatgtgagcgggttattgttggtgatctc
tattgtgacattccattaggtctatacataattcgtggagagaatgttgtgctgatcggc
gagctggatttggataaggaggaacttccaccacatatgactcgcgtttcagaagcagag
ataaaaagggcacaaaaagcagaaagagaggctaccgatcttaaaggaactatgagaaag
aggatggagttcctcgatatggactga
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