Ipomoea triloba (trilobed morning glory): 116022862
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Entry
116022862 CDS
T07384
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116022862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116022862
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116022862
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116022862
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GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
116022862
NCBI-ProteinID:
XP_031119608
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All DBs
Position
6:16606349..16610187
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AA seq
193 aa
AA seq
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MEELLVTPGEVLGSALDYKAGRGAYLSAQHKIVCASITGVRSFVPPPSDSSDQRLTVEVT
GHKAHGPVPQPGAVVIARVTKVMARMASADIMCVGFQAVREKFTGIIRQQDVRATEIDKV
DMHLSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESVAGATMVPISWTEMQCPLT
GQVEQRKVAKVEA
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atggaagagttgttggtgacgccgggagaagtgttgggatcggctttggactacaaagct
gggagaggggcttacctttcagcacagcataagattgtgtgcgcctccatcactggagtc
cgctccttcgtacctcctccttccgactcttcagaccagagactgactgtggaggttact
ggacataaggctcatggacctgttcctcagccaggcgcagttgttatagccagagttact
aaggtgatggctaggatggcttcagcagatataatgtgtgttggtttccaggctgttcgt
gaaaaattcactggtatcatcaggcaacaggatgttagagcaactgagattgacaaagtc
gatatgcatttatcctttcgcccgggtgacattgttagagctttggtgttatcacttgga
gatgcacgtgcatattatctatcaactgcaaagaatgagctgggtgttgtatctgcagaa
agtgtagctggtgctaccatggttccgataagttggacagagatgcagtgccccctgaca
ggccaagttgaacagagaaaggttgctaaggttgaagcttga
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