Ipomoea triloba (trilobed morning glory): 116022945
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Entry
116022945 CDS
T07384
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03030
DNA replication
itr03420
Nucleotide excision repair
itr03430
Mismatch repair
itr03440
Homologous recombination
itr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116022945
03420 Nucleotide excision repair
116022945
03430 Mismatch repair
116022945
03440 Homologous recombination
116022945
03460 Fanconi anemia pathway
116022945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
itr03000
]
116022945
03032 DNA replication proteins [BR:
itr03032
]
116022945
03400 DNA repair and recombination proteins [BR:
itr03400
]
116022945
Transcription factors [BR:
itr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116022945
DNA replication proteins [BR:
itr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116022945
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116022945
MMR (mismatch excision repair)
116022945
DSBR (double strand breaks repair)
HR (homologous recombination)
116022945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
116022945
NCBI-ProteinID:
XP_031119723
LinkDB
All DBs
Position
6:complement(26086971..26090343)
Genome browser
AA seq
604 aa
AA seq
DB search
MERSVTPDAILAILANPSPGSGSDLPELIVQVVDLKPAGNRYMFTANDGKMKLKAILQSS
LSSEVISGAIQNLGLVRILDYTLNDIPLKNEKYLIVTKCDAVSSPLEAEYKTGVKTEENG
IVLKPKQEFVAKSAAQIVHEQNANIAPPARLAMTRRIHPLVSLNPYQGIWTIKVRVTSKG
NMRSYKNARGEGCVFNVELADQDGTEIQATMFNQAARKFYDKFELGKVYYISKGTLRVAN
KQFKTVQNDYEMTLNENSEVEEAINEAAFVPETKFKFVAIDELGSYVNGRELVDVIGVVQ
NVSSTMSIRRKSNNEMIPKRDITIADETKKTVVVSLWSDLATNVGQELLDMADKSPVVAI
KSLKVGDFQGLSLSAITRSTVLVNPDMPEAKKLRSWYDCEGKETSLTSVGSGLSSFAKGV
SWSMYSDRVSLLHITSNPNLGEDKPVFFSIKANISFIKPDQAMWYRACKTCNKKVTEAIG
SGYWCEGCQKNDTDCSLRYIVAMRVSDASGEAWLSVFNEQAEKIIGCSADELDRLKSQDG
DSSAYQMKLKEATWVPYLFRVSVTPQEYNNEKRQRITVRAAAPVDFAAESRYLLEELAKM
NICV
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggaaagatcggtgactccagatgcgatattggccatactagcaaacccatcgccggga
tctgggtcggacctcccggagttaattgttcaagtagtagatctcaaaccagctgggaat
cgctacatgttcacagctaatgatgggaagatgaagcttaaggcaattctacaatccagc
ttgtcatctgaagtaatctctggtgctattcagaatctgggtctagttcggattcttgat
tatactcttaatgacatcccattgaagaatgaaaagtacctgattgtgacaaaatgtgat
gctgtatcttctcctcttgaggctgagtacaagacaggtgtgaaaactgaagagaatggg
atagtattgaagccaaagcaagaatttgtagccaaatcagctgcccaaattgtacatgaa
cagaatgcaaacattgcgccacctgccagattggcaatgacccggagaattcatccactt
gtttccttgaatccttatcaaggaatctggaccataaaggttcgtgtaacgagcaaagga
aacatgcggtcttacaagaatgctaggggagaaggctgtgtcttcaatgttgaattagca
gatcaggatggcacagaaatacaggcaacaatgttcaaccaggctgcgaggaagttctat
gacaagtttgaattggggaaggtttattacatttcaaagggaactttgagagttgctaac
aagcagttcaagacagtgcaaaatgattatgaaatgaccctgaatgagaactctgaagtt
gaagaggctataaatgaagctgcttttgttcctgaaacaaaattcaaattcgtcgcaatt
gatgaactgggttcttatgtaaatggccgggagctagttgatgttattggtgtggttcaa
aatgtgtcttctacaatgagtatcaggaggaagagtaacaacgagatgattccaaagcgt
gacataaccattgcagatgaaacgaagaagactgttgtggtgtctctttggagtgatcta
gccaccaatgtaggacaagagctgctagatatggctgataaatccccagtagttgcaatc
aaatcccttaaagttggagatttccaaggtttatctttatctgcaattactagaagtact
gtgctggtgaatccggatatgcctgaagccaaaaaattgagatcctggtatgattgcgaa
gggaaagaaacctcattgacttcggttggctctggtttgagctccttcgccaaaggtgta
tcgtggtccatgtactctgacagagtatccctacttcatataacaagtaacccaaacctg
ggtgaggacaagcctgtgtttttcagtataaaggcaaatattagcttcattaaacctgat
caagcgatgtggtatagagcttgtaaaacatgtaacaagaaagttaccgaggccattgga
tctgggtactggtgtgaaggttgccagaagaacgacacagattgtagcttgagatatata
gttgccatgagggtttctgatgcgagtggtgaggcttggctctctgtcttcaatgaacaa
gcagaaaaaataattggatgctctgcagatgagcttgacaggctgaaatctcaggatgga
gatagtagtgcttaccaaatgaaattgaaggaagcaacatgggttccttatcttttccgg
gtcagcgttacaccccaagagtacaataacgaaaagaggcaaaggataacagtcagagcg
gcggctccagttgattttgcagctgaatccagatacttgctggaagaattggctaagatg
aacatctgtgtataa
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