Ipomoea triloba (trilobed morning glory): 116023040
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Entry
116023040 CDS
T07384
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03440
Homologous recombination
itr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116023040
03450 Non-homologous end-joining
116023040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
itr03032
]
116023040
03400 DNA repair and recombination proteins [BR:
itr03400
]
116023040
DNA replication proteins [BR:
itr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
116023040
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
116023040
BRCA1-C complex
116023040
NHEJ (non-homologous end-joining)
MRX complex
116023040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
Rad50_zn_hook
SMC_N
SbcC_Walker_B
AAA_29
AAA_11
AAA
ABC_tran
AAA_13
AAA_16
Cas_Csa5
Motif
Other DBs
NCBI-GeneID:
116023040
NCBI-ProteinID:
XP_031119850
LinkDB
All DBs
Position
1:complement(32712429..32728705)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKVACTGELPPNAR
SGHSFVHDPKVAGETETKGQIKLRFKTAAAKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKSYKLKLENLQTLKDAAYKLRESIAQDQEKTEKVKN
QMQELEGEIQNLDSKIHHVEGTLKDLRKLQDLIAAKTVERSTLFKEQERKYAALATENED
TDEELLEWKTKFDERLARLESKISKLEREKDDTITKRFHLQEEIKDCIRDISKLQTEAEA
HMSNKSQRDATIKELFERFNLGPVSNTPFSDEVAEDLMNRISSRLMGYEKDLEDKKKSNL
AITTTAWRQYENANSRWKDMGASIQAKAEIKSSILKRIEQKKNELDELELEISNVNLVHL
DERERRMQAECERKNQQIEEREFGQTIQQKQSEIYSLVQKIKALNHERDLLAADSEDRVK
LSLKKSELETQKKKHKKIVDEFKDKIKGVMKGRLPPDKDLKKEVTQAQRALHKEFDDLSA
KAREAEKEVNMLQMKIEEVNNNLYKLNKDMESRKRFVESKLQFFDQQSASVDYYSKLLDS
VKEKRDVQKSKYNIADGMRQMFEPFERVARAHHICPCCERPFSAEEEDDFVKKQRVKAAS
SAEHMKVLAVESSHADSQFQQLDKLRMVYEEYTKIGKESIPLAEKNLNELNEELDQKNQA
LDDVLGVLAQIKADKDAVDVLIPPVENAERLLHEIQVLQKQVDDLEYKLDFRGQGVKSME
EIQSELNILETKKDNLHNEVEKLREEQIYMENDRTSAQLRLGNIREEKFKATSTLQNVEK
AQKELEWLTEEKSQVELDEKHFGEALGPLSKEKDKLLRDYNDLKEKFEHEQEKQLQVCSN
FRQEMKALQGLASKIKEYYTLKKGDRLKELLEKQNCSESELRNCESRLQELSEQLTKSKD
SKMNEDNLRRNIEDNLDYRKTKADVDRLTREIESLEEEVLKIGRLSSVEAEIVRLSQERE
RLLSELNRSRGTISVFESNISKNKIDLKQAQYKDIDKRHFDQLILLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSESAGTRSYSYKLVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDCPNSESLAAALL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRISKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtcgacaagatgctgataaagggaatccggagctttgacccggagaacaaa
aacgtcattacattcttcaaacccttaaccctcatcgtcggccccaacggtgccggaaaa
actacaatcattgaatgcttgaaggtggcctgcactggagaattgcctcctaatgctcgt
tccggtcatagttttgtccatgatcccaaggtggcaggggagacggagacaaaagggcag
attaagttgcggtttaagactgcagcagcaaaggatgtggtatgcattaggtcatttcag
ctaactcaaaaggcaacaaagatggagtataaagccattgagagtgtgctgcagacaatc
aatcctcatactggagagaaagtctgcttaagctataggtgtgcagacatggaccgtgaa
atacctgctcttatgggtgtgtcgaaggctattcttgaaaatgtgatttttgtacaccaa
gatgaggcgaattggccactgcaagatccttctacgctgaaaaagaagtttgatgacatc
ttctctgctactagatatacaaaggctctggaagttattaaaaaacttcacaaggatcaa
gcccaagagataaagtcatataaactgaaattggagaatcttcaaacactgaaagatgct
gcatacaagttaagagaaagtattgctcaagatcaggagaaaacagagaaagtgaaaaat
caaatgcaagagcttgaaggagagatccagaacttagatagtaagatccaccatgttgaa
ggaactttaaaggacctaaggaaattacaggatctgatagctgccaaaactgtagaaaga
agcactttgttcaaagagcaggagagaaaatatgctgctctagctacagagaatgaagat
actgatgaagaactgctggaatggaaaaccaagtttgatgaaaggctagctcgtttggaa
tcaaaaattagcaaattggagagagaaaaggatgacacaataacgaagagatttcacctt
caggaggaaattaaagactgtatccgggatattagcaaacttcaaactgaagctgaagct
cacatgtccaacaagagtcagagagatgcaactattaaggagctttttgaaagatttaat
ttaggtcctgtttcaaatactccattcagtgatgaagttgctgaggacctcatgaatcga
atatcatcaaggctcatgggctatgaaaaggatttggaggataaaaagaaatcaaacctg
gcgataactacaacggcatggcgtcagtacgagaatgcaaatagccgttggaaagatatg
ggtgccagcatacaggctaaagcagagatcaagagcagtattttgaagcgcattgaacaa
aagaagaatgagcttgatgagcttgaacttgaaatatctaatgtcaatttggttcacctg
gacgagagggaacggagaatgcaagctgaatgtgagagaaagaaccaacaaatagaagaa
cgagaatttgggcaaactattcagcaaaagcagagtgagatatatagcttagttcaaaaa
atcaaagctcttaatcatgaaagagacctattggctgctgattctgaagacagagttaaa
ctctcccttaagaagtcagagctggaaacccagaaaaagaaacacaagaagatagttgat
gaattcaaggataaaattaaaggggtgatgaaaggaaggcttcctcctgacaaggatttg
aagaaagaagttacacaggcccagagggctcttcacaaagagtttgatgacttgagtgca
aaagctcgtgaagctgagaaggaagtgaatatgttgcagatgaaaattgaagaagttaat
aataacttatacaaacttaacaaggacatggaatcaagaaaaagatttgtcgaatcaaaa
ctccagttttttgaccaacagtctgcaagtgttgactattactctaaacttttggattca
gtcaaagagaaaagggatgtccagaaaagcaaatataacattgctgatggtatgcgtcaa
atgtttgagccatttgaaagagttgctcgtgctcatcatatttgcccttgctgtgaacgt
cccttctctgctgaagaggaagatgattttgttaaaaagcaacgggtgaaagctgcgagc
tctgctgagcatatgaaagtattggctgtggaatcttcacatgctgattctcagttccaa
caattagacaagcttcgtatggtttatgaagagtatactaaaataggaaaggagtcaatt
cctcttgcggagaaaaaccttaatgagctcaatgaagagttggatcaaaagaatcaggct
cttgatgatgtgttgggggtattggctcagataaaggcagacaaggatgcagtggatgtc
ctaattccacctgtagaaaatgctgaaaggcttttacatgaaatacaggttttgcagaag
caggttgatgatttggaatacaagcttgattttcgagggcagggtgtgaaatccatggag
gaaatccaatcagagctgaatatattggagaccaagaaggataatttgcataatgaggta
gaaaagctaagagaagaacagatttacatggaaaatgatcgcacaagtgcacagctaagg
ttgggtaacatcagggaagagaaatttaaagcaacttccactttgcagaatgttgagaag
gcacaaaaggaattagaatggttgacagaagagaaaagtcaagttgagcttgatgagaag
catttcggagaggctcttggacctttatcaaaggaaaaagacaaattgctccgtgactac
aatgatttgaaagagaaatttgaacatgagcaagaaaagcagttacaagtttgttcaaat
tttagacaagaaatgaaggcactgcaggggctggcttctaaaattaaagagtattatact
ttgaagaaaggagatagattgaaggaactgcttgaaaagcaaaattgctcagaatctgag
ctccgaaactgtgagtccagattgcaggagttatcagaacaactgaccaaaagcaaggat
tcaaagatgaatgaagacaatttgaggcgcaacattgaggataacttggattataggaaa
accaaggctgatgtcgatcggcttactcgtgaaattgaatcattggaagaggaagtgctg
aaaattggccgtctctctagtgttgaggcagagattgtaaggctttcacaagaacgagag
aggcttctttcagagttaaatagatcacgtggtactatctctgtttttgaaagcaatata
tccaaaaataagattgatcttaaacaagcacaatacaaggacattgacaaacgtcatttt
gatcagctaatcctgcttaagacaactgagatggcaaacaaggacctggacagatactac
aatgcccttgataaggcacttatgcgattccacacaatgaagatggaagagataaataag
attattcgtgaactgtggcagcaaacttacaggggacaagatatagattacataagaatt
cactcggattctgaaagtgctggcactcgatcttatagctataagttagtgatgcaaact
ggtgatgccgaacttgaaatgcgagggaggtgcagtgctggtcaaaaggtccttgcgtca
cttataatacgattggcattagctgaaactttttgcttaaactgtgggatactggcactc
gatgaaccaacaacaaacctagattgcccaaactctgaaagtcttgctgcagcactgcta
aggatcatggaggaccgaaagggacaagagaactttcaattgattgtaatcacacatgat
gagcgatttgctcaactcattggtcaacggcagcatgcagaaaaatactaccgcatctca
aaggatgaccatcagcacagcataattgaagcgcaggagatatttgattaa
DBGET
integrated database retrieval system
