Ipomoea triloba (trilobed morning glory): 116023196
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Entry
116023196 CDS
T07384
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116023196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116023196
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116023196
mRNA degradation factors
5'-3' decay
Decapping complex
116023196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
DUF2497
Beta-prop_Vps41
EIF3I
Sey1_3HB
Motif
Other DBs
NCBI-GeneID:
116023196
NCBI-ProteinID:
XP_031120042
LinkDB
All DBs
Position
6:18404834..18412378
Genome browser
AA seq
1428 aa
AA seq
DB search
MASAGNPNQPGGGPFDMHKYFKPSAPSPTPPVSASGNPNPQNPNNPNLMISSPFPPPSAS
YPPPTGGGGGGGSVPPYSFAPQTSPFHHHPQFHLHIPQYSGPPPQGDGQFANVHQQRSMS
FPTPPLQPPPASPHQYQNPNSSPNPGARLMALLSAPPSAHEIQQPSMPVPAIQPTTSGSD
LSEFSVPTSVPLMPSVPSIGIIHAGSGPMRMPSSKLPKGRHLIGDHIVYDIDVRLPGEVQ
PQLEVTPITKYGSDPGLVLGRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLAQRVT
DMAFFAEDVHLLASASVDGRVYIWKITEGQDEDDKPQITGRIVIAIQIVGEGESFHPRVC
WHCHKQEILVVGIGKKVLKIDTTKVGKGEVFSAEEPLRCPVDRLVEGVQLVGTHEGEVTD
LSMSQWMTTRLVSASVDGTIKVWEDRKSTPIAVLRPHDGQPVNSVTFLAAPNHPDHIILI
TGGPLNREVKIWSSASEEGWLLPSDAESWNCTQTLELKSSAETRIGESFFNQVVALSQAG
LLLLANAKKNAIYAVHLEYGPNPAATRMDYIAEFTVTMPILSFTGTSDLLPNGEQIVQVY
CVQTQAIQQYALDLSQCLPPPLENAMFERSESSASRDATIEGFSQMESSGSKSTELPISS
PTPKLPIHDSGSESAPSGRHPMSSASTDVTTQEFATYSMESKPDAISCSNTDTDIAPTSS
PPLPLSPRLSRKLSGFRNPSNSFEPSSINDHGGDPKVVEYSVDRQMDSIHTNLSDVGPLD
DEARNDESKVSHEDASSGLSHPIKFKQPTHLVTPSEILMDSSEMNHIIEQKSEDIQDVLV
NNEARNVEVEVKVVGESRFNHNNDIGSRELHTFVSDNKEKAFCSQASDLGMEMARECRAL
SPETYIAEDPRQFDGTNGSEDLAQPSSNQEEEHDSTSNLSGKELDSKIPVPVQQQTEPSV
KGKKPKGKNSQGSVPPSALPSAFNSTDSSNEAVVSSSNSSMEAAFSQILSMQEMLNQLMS
MQKETQKQMGMMVAVPVTKEGRRLEAALGRCMEKAAKSNADALWVRLQEESAKQEKLLRD
RTQQMTNMISNCLNKDLPGLVEKIVKKELSTIGQTVARSVTPIIEKAVSSAISEAFQKGV
GDKTVGQLEKTINSKLEATVARQIQAQFQTSGKQALQETLKSTLEASVIPAFDMSCKAMF
EQVDATFQKGMAEHTAAAQQQFESMHSPLAHALRDAINSASSMTQTLSGEFAEGQRKLLA
LASSKATNPIVSQLSNGPMLQIEKFEAPPDPTKELSRLLAERKYEEAFTAALQRSDVSIV
SWLCSQVDLPGLLSMNPLPLSQGVLLSLLQQLACDISNETSKKLSWMRDVLSAINPTDPM
IAMHVRPIFEQVYQIVNHHRGLPTTAAPELSNIRLIMHVINSMLMTCK
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagctggaaatcccaatcagccaggtggaggcccattcgatatgcataagtac
ttcaaaccctcagcgccatcgcctacgccgcctgtatcagcttcggggaatcccaatccc
caaaaccccaataaccctaatttgatgatttcttcgccgtttcctccaccgtcggcgtct
tatcccccgccgacgggaggcggaggcggcggcggcagcgtgccgccttactcgttcgcg
cctcagacctcgccattccaccaccacccgcagttccacctccacatccctcagtacagc
ggcccgcctcctcaaggggacggccagttcgctaacgtgcaccagcagagatccatgtct
ttccctactccgcctctccaacccccgccggccagtcctcaccagtatcagaacccgaat
agtagccccaatccgggtgctcggctcatggctctcttgagtgcgccgccttccgctcac
gaaatccaacaaccctctatgccagtgcccgccattcagcctaccacttctggctctgat
ctttctgagttctcagtgcccaccagtgttcctttgatgccctcagtaccaagtattggc
atcatacatgccggttcaggacctatgcgaatgccgagcagtaagttgcctaaaggccgg
catttgattggggatcacattgtatatgacatagatgttagattgcccggtgaggtgcag
cctcaactggaggttactcccattacaaagtatggttcggatcctgggcttgttttagga
cggcaaattgcagttaacaagacatacatatgttatggacttaagttgggcgccataagg
gttcttaacatcaatactgctttgagatcattgcttaaaggtcttgctcagagggttaca
gacatggctttctttgcagaggatgttcaccttttggctagtgcaagtgttgatggacgg
gtttatatatggaaaatcactgaaggacaagatgaggacgacaagccacaaataacaggc
cggatagtcattgctattcaaattgtgggagaaggagaatcttttcacccacgagtctgt
tggcattgccacaaacaagaaattcttgttgttgggatcggaaaaaaagttttgaaaatt
gataccacaaaagttggaaagggtgaagtattttcagcggaagaacccctgaggtgtcca
gttgaccgcttggttgaaggtgtccagcttgttggtactcacgagggagaagtgactgat
ttatcgatgtctcagtggatgacgactcgtcttgtatctgcttcagtagatggcacgata
aaggtttgggaggatcgcaaatcaactccaattgctgtactgaggccacatgatggccag
cctgtaaattctgttacatttttggctgctccaaatcaccctgaccacatcatactaatt
actgggggcccacttaatcgagaagtgaagatatggtcatcagcaagtgaagaaggctgg
ttgcttccaagtgatgctgaatcatggaactgtacacagacattagagctgaagagttca
gctgaaactcgaattggagagtcattttttaatcaagttgtggccttgtctcaagctggt
ttgctcttattggcaaatgccaaaaagaatgccatatatgcagtgcacctagaatatggt
cctaacccagctgcaacaaggatggattacatagccgaatttactgttactatgccaata
cttagtttcactgggacgagtgacctactgccaaatggtgaacagatagttcaggtgtat
tgtgttcagacacaggctattcagcagtatgctctggacttatcacagtgtttacctcct
ccattggagaatgccatgtttgagaggtcagaatctagtgcttcacgtgatgctactatt
gaaggattttctcagatggaatcttctggaagtaaatcaacagaattacctatatctagc
cctactccaaaattacctattcatgattctggttctgagagtgcaccatctgggagacat
cctatgagctctgcctctactgatgtaactacacaagaatttgctacttatagcatggaa
agtaaaccagatgccatttcttgttcaaacactgatactgatattgcacccacttcatca
cctccgcttcctttgagtcctagattatctcgtaaactttctggattcagaaacccatca
aacagctttgaacccagctctattaatgatcatggtggagatccaaaagttgttgagtat
tcagtagacaggcaaatggactccattcacaccaacttgtctgatgtaggccccttggat
gatgaggctaggaatgatgaaagcaaggtttcccatgaggatgcttcatcaggtctcagt
caccctatcaagttcaagcagcccactcatctggttactccttctgagatattgatggac
tcttctgaaatgaaccatattattgagcagaagagtgaagacatacaggatgttttagtc
aataatgaggcaagaaatgtagaggtggaagttaaggttgttggtgaatcaaggtttaat
cataataatgatattggttctcgagaacttcacacttttgtgtcagacaacaaggagaaa
gcattttgctctcaagcatctgatcttgggatggaaatggcacgagaatgtcgtgccttg
tcacctgaaacctatattgccgaggatcctaggcaatttgatgggaccaatggaagcgag
gatttggcccaaccatcaagtaatcaagaggaggagcatgactctacaagtaatctctct
ggaaaggaattagattcaaaaatccctgttcctgttcaacaacaaactgaaccgagtgta
aagggcaagaaaccgaaagggaagaattctcagggttctgtgccaccatcagcattacct
agtgcttttaattcaacagattcctccaatgaagcagttgtcagctcgagtaactcctcc
atggaagctgcattttcacagatattgtctatgcaagagatgctgaatcagctcatgtcc
atgcaaaaagaaacacagaagcagatgggcatgatggttgctgttccagtaaccaaagaa
ggaagaaggcttgaggcagccttgggacgctgcatggagaaagctgccaagtccaatgct
gatgctttatgggttcgtcttcaagaagaaagtgcaaagcaggaaaagctattacgtgac
cgtactcaacagatgactaatatgatctccaactgcttaaacaaggacctgccagggctg
gtagaaaaaatagtgaagaaggaattaagtaccattggtcaaactgttgcgcggagtgta
acacctattatagagaaagcagtatcctcggctatttctgaagccttccagaagggtgtt
ggtgataagacagtgggtcaattggagaaaacaatcaattctaaacttgaagccactgtc
gccaggcaaatccaagcacaatttcaaacttctggcaagcaagctcttcaggaaacattg
aaatccactcttgaagcttcagtaatccctgccttcgacatgtcatgcaaggcaatgttt
gagcaagttgatgctacttttcaaaaaggaatggctgaacacactgctgctgctcaacag
caatttgagtcaatgcattcgcctttggcacatgctttacgggatgcaataaattcagca
tcatcaatgactcaaacccttagtggtgagtttgctgaaggtcaaagaaagttgcttgct
ttagcaagttccaaagctacaaatccaattgttagccaattaagtaatgggcccatgctc
caaattgagaagtttgaggcaccccctgatccaaccaaagagttatctagactgttagca
gagagaaagtatgaggaggccttcactgcagccttgcaaagaagcgatgtgtctattgta
tcatggctatgctctcaggttgacctgcctggacttttgtcgatgaatcctctccctttg
agtcaaggagtactcctctcacttcttcagcagttggcatgtgacattagcaatgaaaca
agcaagaaactatcatggatgagagatgtgctatcggccataaatccaactgacccaatg
attgcaatgcatgtacgcccaatctttgagcaagtatatcaaatagtgaaccatcaccgt
ggtcttcccacaactgctgcacctgaactatccaacattcggctgattatgcacgttata
aactctatgctgatgacctgtaaatga
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integrated database retrieval system
