Ipomoea triloba (trilobed morning glory): 116023268
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Entry
116023268 CDS
T07384
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03030
DNA replication
itr03420
Nucleotide excision repair
itr03430
Mismatch repair
itr03440
Homologous recombination
itr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116023268
03420 Nucleotide excision repair
116023268
03430 Mismatch repair
116023268
03440 Homologous recombination
116023268
03460 Fanconi anemia pathway
116023268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
itr03000
]
116023268
03032 DNA replication proteins [BR:
itr03032
]
116023268
03400 DNA repair and recombination proteins [BR:
itr03400
]
116023268
Transcription factors [BR:
itr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
116023268
DNA replication proteins [BR:
itr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
116023268
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
116023268
MMR (mismatch excision repair)
116023268
DSBR (double strand breaks repair)
HR (homologous recombination)
116023268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
zf-CCHC_3
DUF223
RMI1_C
DUF936
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
116023268
NCBI-ProteinID:
XP_031120120
LinkDB
All DBs
Position
6:complement(22521431..22525417)
Genome browser
AA seq
904 aa
AA seq
DB search
MPPPVKLSEGAISMLINGEGQAADMKPVLQVADIRLVNTQNQSSTNERYRIMLSDGEFLQ
QGMLATQRNDLVRSQQIQKGSIIQLNQFVCNVIQNRMIIIIIELDVILDVCDPIGDPKQH
PLKTNGNTPVTPPVARSPAPAQSYVSDSGSVTGNPQSFTSGRGATGFDSKPNVPGGIPSQ
PFETNRQVGHGSAVSNVNLPRYNSPSAPVYPKVESGAGASGLSTNSYLRPPQPSYQHPSP
VFSNRGPIARNEAPPRIIPIAALNPYQNRWTIKARVTAKGELRHYNNARGDGKVFSFDLL
DSDGGEIRVTCFNAVADQFYNQIEPNKVYLISKGNVRVLQDRAKAFNNLRNDHEIHLELT
STVQPCLEDDKSIPQQQFQFRSVSEIEEMDNNTIIDVIGIVSSISPSSSIMRKNGTETLK
RSLQLKDMSGRSVELTLWGNFCNAEGQTLQNMCDSGVFPVLAVKACRINDFNGKAIGTIS
PSQMFIEPDFPEAHKLREWFDKDGKNAPVISISRETSMGRTDVRKTISQIKDEKLGTSEK
PDWITISATLSYIKPENFCYNACPIMIGERQCNKKVTNDATGKWLCERCDKTFDECDYRY
ILQFQIQDHTGLTWVTAFQECGEEIMGMSAKDLHYMKNEEQDDERFQEVMRNVLFKKYIF
KLKVKEEMFSDEVRVKSTAVKVEKVNPQSETKYILDMIDKLKAEELNSVAPNANNVAPSS
GLNNTAFGSGIRESGSNVMNYGSSAGTIGSRVQTSQAGPYGNQYGGSGQAPPSSHMYTSC
TSCGGTGHSSVNCPNVTRNQGQAYGGGGFNSRVGSGPSASGGGASDKCYKCGETGHWSRD
CPGASNVPPAYGSNSASGKCYKCGEAGHWSRDCPGASNAPPAYGSNTMNPGRFRNVPSQH
VGGF
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgcctccgccggttaagctttccgaaggcgcgatatcgatgttgataaacggcgaaggg
caggccgccgatatgaagcctgtgctgcaggtcgccgatattcggcttgtgaacacccag
aaccagagcagcaccaatgagcggtaccggattatgctgtccgacggggagttcctccaa
caagggatgttggccacgcagcgcaacgatcttgttcggtcgcagcagatccagaaaggc
tccattattcaattgaatcagttcgtctgcaatgtcatccaaaatcgcatgataatcatt
atcattgagttggatgtgattcttgacgtgtgtgatcctattggggatccgaaacaacat
cctctgaagacgaatggtaataccccagtaacccctccggtggcaaggtcacctgcacca
gctcagtcttatgtgagtgactcagggtctgtaactggcaatcctcagtcctttacttca
gggagaggtgctactggctttgatagtaaaccaaatgtccctggaggaattccttctcaa
ccttttgagacaaatcgccaggttggtcatggtagtgctgtcagcaatgttaacttacct
cggtataattctccaagtgcccccgtttatcccaaagtggaatctggtgctggggcttcc
ggactttcgacaaacagttatttgcgcccacctcagccatcatatcagcatccatctcca
gtgttttcaaacagagggcccatagctaggaatgaagcacctccacgtattattcctatt
gctgctctgaatccttatcagaaccgttggactataaaggccagggtaactgcaaaagga
gaacttagacactacaataatgcccgaggtgatggtaaagtattctcttttgatcttctt
gattcagatggtggggaaataagggtaacgtgctttaatgcagtggctgaccaattttac
aaccagattgaaccaaataaagtatatttgatttcaaaaggtaatgtgagagttcttcag
gacagagcaaaagctttcaataacctgcgaaatgatcatgaaattcaccttgaactcacc
tcaacagtacagccttgcttggaagatgataaatcaattcctcaacagcaatttcagttc
aggtccgtaagtgaaatagaagaaatggacaacaataccattatagatgtgattggtata
gtctcatctattagtcccagtagttcaatcatgaggaaaaatggaactgaaactctgaaa
agatccctccaattgaaagacatgtctggtagaagtgttgaattgactttgtggggaaat
ttttgcaatgcagaagggcaaacacttcaaaacatgtgtgattctggtgtcttccctgta
ttggcagtgaaagcctgcagaatcaatgacttcaatgggaaagcaatagggactatatct
ccaagccaaatgttcattgaacctgattttcctgaggcacacaaacttagggaatggttt
gacaaggatgggaagaatgcccctgttatatccatctctagagaaacatctatgggccgg
acagatgtgagaaagaccatctctcagatcaaagatgaaaaattagggacttctgagaag
ccagattggatcactattagtgccactctaagttacattaaaccagaaaacttttgctac
aatgcatgccccatcatgattggggaacggcagtgcaataaaaaggtcacaaatgatgca
actgggaagtggctatgtgaaagatgtgataagactttcgatgaatgtgattatcgatac
attcttcaattccagattcaggatcatactggcttgacttgggtaactgcattccaggaa
tgtggtgaggagatcatgggaatgtctgcgaaagatttgcattacatgaaaaatgaagaa
caagatgatgagagatttcaagaagttatgcgaaatgttctttttaagaagtatattttc
aaattgaaggtcaaagaggaaatgtttagtgatgaggtgcgtgtaaagtctactgcagta
aaagtggagaaggttaatccccaatcagagactaaatatattctggacatgattgataag
ctcaaagcagaggaattgaattctgtggctccaaatgctaacaatgtagctccaagctca
ggactgaacaatactgcatttggaagtggaattagagaaagcgggagtaatgttatgaat
tatggcagcagtgctggaactattggaagcagagtgcagacaagtcaagccggtccatat
gggaatcaatatggtggttctgggcaagcaccgcctagttcccatatgtacacaagctgt
accagttgtggtggcacgggccatagctctgtgaactgtcctaatgtcacgaggaatcaa
ggtcaggcatatgggggcggtggcttcaatagtagagtaggttctgggccaagtgccagt
ggtggtggtgcttctgataagtgctataaatgtggggagactgggcactggtcaagagat
tgccccggtgctagcaatgttccccccgcttatggaagcaatagtgcttctggtaagtgc
tataaatgtggggaggccgggcactggtcaagagattgccccggtgctagcaatgctcct
cccgcttatggaagcaatacgatgaacccgggaagattcaggaatgttccaagtcaacat
gttggtgggttctga
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