Ipomoea triloba (trilobed morning glory): 116023291
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Entry
116023291 CDS
T07384
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116023291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116023291
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116023291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
116023291
NCBI-ProteinID:
XP_031120145
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Position
6:18885200..18889837
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AA seq
474 aa
AA seq
DB search
MMESDLGKLFIGGISWDTDEDRLKEYFRSYGEVVEAVIMRDRNTGRARGFGFVVFADPAV
AERVVKEKHMIDGRTVEAKKAVPRDDQNIINRSNSSIQGSPGPGRTKKIFVGGLASTVTE
SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDRALYKTFHELNGKMVEVK
RAVPKELSPGPSRSPLIGYNYGLSRPNNFLNNYAQGYNLGSVGGYGVRMDNRFSPVASGR
TGFSQFANPAYGMSMNLDPALNPSFAVGSNFSSNVGYGRVLSPYLSSNSSRYNTPIGYSP
SSNRGDSFLSSPTRNLRGNGGLNTSMTLGGSGSFLASGGFGVFGNNGANWGSSVPAQVGG
NSSGYAGGNFGFRSGDNSYGLGSGGIGRNNAAAIATTSSFTTPIGAYEGSYGDLYRSASM
YGDPTWQAASSDPDGSGSFGYGLGNPGAATAKDSEGYIGGYNIANRQSNRGIAA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgatggaatcggatctcggtaagctattcattggtggaatatcttgggacacagatgag
gatcgtcttaaagagtattttagatcgtatggagaagtggtggaggctgtgatcatgaga
gatcgcaacactggtcgtgcccgaggtttcggttttgtggtctttgctgatcctgcagtt
gctgaacgagtggtgaaggagaagcatatgatagatggaagaactgttgaggcaaagaag
gctgtacctagggatgaccaaaacataataaatagaagcaatagcagcattcaaggatct
ccgggtcctggacgcacaaaaaagatttttgtaggagggttagcatccacagttactgaa
agtgactttaagaagtactttgatcagtttggcacaatcacggatgtggttgtgatgtat
gaccacaacactcaacggccaagaggattcgggttcataacttatgattcggaggatgca
gtggatagggcattgtataaaaccttccatgaactcaatggtaaaatggttgaggtgaag
cgtgcagttccgaaagagctttctcccggccctagccgtagccctctgattggatacaac
tatggtctcagtagacccaacaactttctcaacaactatgcgcagggatataatctgggt
tccgttggaggctatggggtcaggatggacaataggtttagccctgttgccagtggtcgt
acggggttctctcaatttgctaatcctgcttatggaatgagtatgaatttggacccggca
ttgaatccgagctttgcagtgggttccaactttagtagtaatgtcggttatgggcgggtt
ctgagcccatatttgagtagcaattcaagcagatacaatactcccattgggtatagccca
agcagtaaccgtggtgattcctttttaagctctccaacaaggaacctaaggggaaacgga
ggccttaacacttcaatgactcttggtggctccggttcattcttggcttctggtggtttc
ggagtgtttggaaacaatggggcaaattgggggtcttctgttcccgctcaagttggcggg
aattcatctggctatgctggcgggaatttcggattcaggagtggggataacagttacggg
ctgggatctggagggattggaagaaataatgcagcagctatagctacaacatcttcattt
actacacctattggtgcatacgaggggtcttatggggatttatatcgcagcgcttctatg
tatggagatccaacttggcaagctgcttcttctgatcccgatggttctggttctttcgga
tatggacttggaaatccgggagctgctactgccaaagattctgaaggttatattggaggt
tataatattgcaaatagacaatcaaatagaggaattgcagcatag
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