Ipomoea triloba (trilobed morning glory): 116025245
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Entry
116025245 CDS
T07384
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116025245
03041 Spliceosome [BR:
itr03041
]
116025245
03036 Chromosome and associated proteins [BR:
itr03036
]
116025245
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116025245
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116025245
mRNA cycle factors
Common to processing body (P body) and stress granule
116025245
Spliceosome [BR:
itr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116025245
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
116025245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116025245
NCBI-ProteinID:
XP_031122269
LinkDB
All DBs
Position
7:complement(1787457..1791936)
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AA seq
620 aa
AA seq
DB search
MPTSWADSVSAAEGAAAVASSNSTKQAYVPPHLRNKPATSDPPKQPATGSYASAAAAVAV
AASGNDRVHYGGPPQQGGSRWNGPRNEFRGGYGGGGGGGGGGGGHGGWNTRVGGWDRSRE
RESNPFGDEGDQPFDEQENSGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGDAVNNNIR
RCKYVKPTPVQRYAIPIALAGRDLMACAQTGSGKTAAFCFPIISGIMRGQFLRPPRPRMA
LPLALILSPTRELSCQIHEEARKFAYQTGVRVVVAYGGAPINQQLRELERGVDILVATPG
RLVDLLERARVSLEMIRYLALDEADRMLDMGFEPQIRKIVQQTDMPPPGVRQTMLFSATF
PKEIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEYVQETDKRSHLMDLLLAQMANGANG
KQCLTLVFVETKKGADSLEHWLCINNFPATAIHGDRTQQEREQALRAFKSGRTPILVATD
VAARGLDIPLVAHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFNEGNSSIARSLADL
MQEANQEVPAWLSRYAARSSHGGKSRRGAGRFGGRDFRRESNFNRGNPDYYSGGNTGGGY
SGFGGGYNPSYGAGVASAWD
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgccaacatcgtgggctgattctgtttccgcggcagaaggcgccgccgcagttgcctcg
tccaattcaaccaagcaagcttatgttccaccgcaccttagaaacaagcctgctacctcg
gaccctccgaaacaacctgcgacaggttcatatgctagtgctgctgctgctgtagcagtt
gcagcatcagggaatgatagagtgcattatggtgggccgccccagcaggggggaagtcga
tggaatggtccccggaatgaattccgtggcggctatggcggtggaggaggtggtggtggt
ggtggtgggggacatggtggttggaataccagagttggtggttgggatcgttccagggag
cgagagtctaatccgtttggggacgagggagatcagccatttgatgagcaagagaattcg
ggtattaattttgatgcatatgaggatattccagttgagacgagtggagataacgtgccc
cctcccgtgaatacttttgccgagattgatttaggggacgctgtgaacaataatattagg
aggtgcaagtatgtgaagccaacgcccgtgcagcgatatgctatccctatagcactcgct
ggccgggacttgatggcttgtgctcagaccgggtctggcaagacggctgctttctgcttc
ccaatcattagcgggatcatgaggggtcaatttctaaggccaccaaggccacgcatggca
ttacctcttgcccttattctttctccaacaagggagctttcatgccaaattcacgaagaa
gccaggaagtttgcatatcaaactggagtccgggtggttgttgcctatggtggcgcgcct
ataaaccaacagcttcgggaactagagagaggtgtggatatacttgttgcaacccccggg
agattagttgatttgttggagagggcaagagtctctttagagatgattaggtatttggct
ttagacgaggctgatcgaatgttggacatgggttttgaaccccaaataaggaaaattgtg
caacagaccgacatgcctccaccgggtgtaagacagacaatgctgttcagtgctaccttc
ccaaaagagattcagagattagctgcagattttctcgcaaactacatctttttggctgtc
ggaagggttggatcaagtactgatttgattgtccaacgagttgaatatgttcaagagact
gacaagagaagccatttaatggatctcctcctcgcacaaatggctaatggggctaacggc
aagcaatgtcttacacttgtttttgtggagacgaagaaaggagctgattctctggaacat
tggctctgtattaacaacttccccgctactgctatacatggtgataggacacaacaggaa
agagaacaagctttgagggctttcaaaagtggcaggacgccgattctggttgcaacagac
gtggcagcacgtggtctcgacattcctctcgttgctcacgtggtcaactttgacctccca
aatgacattgacgattatgtccaccgcataggaagaactggacgagcaggaaaaaccggc
ctggccaccgccttcttcaacgagggcaattcctctatcgcgcgctccttggcagatctg
atgcaagaagcaaaccaagaagtacctgcttggctttcccgctacgctgccagatcctcc
cacggaggcaaaagccgccggggtgccggccgctttggcggccgtgatttccgaagagag
tccaatttcaaccgaggcaatcccgactactactccggaggcaacacgggcggcggttac
agtgggttcgggggcgggtacaatccatcctacggagctggcgtggccagcgcctgggac
taa
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