Ipomoea triloba (trilobed morning glory): 116026566
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Entry
116026566 CDS
T07384
Name
(RefSeq) uncharacterized protein LOC116026566
KO
K06100
symplekin
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116026566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116026566
03019 Messenger RNA biogenesis [BR:
itr03019
]
116026566
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116026566
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116026566
U7-dependent histone pre-mRNA processing factors
116026566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
116026566
NCBI-ProteinID:
XP_031123747
LinkDB
All DBs
Position
8:complement(5104118..5125845)
Genome browser
AA seq
1342 aa
AA seq
DB search
MAGPLLREQVLPLLAAANNHGDLDVKLSSLRQVKDVLLSADASQAAEIFPYLIDLQSSPE
TMLRKYLIQVIEDIAAKSMEHALMLMPVLLASLRDNSSLVVKQSIVSGTSIFYGVVEELS
MQFHRRGLIERWLEEFWTWMIKFKDAIFGILFEAGPVGVRLLAIKFLEIYVLLFTPDATD
SERYTSEAPTKFRRAFNISWIIGHHPIMDPAALISDANRTIGILLELLRSASSVPGSLTI
SVVNSLATIAKKRPAHYNFILSALLDFDPNFEMTKGGHTASIQYSLRTAFLGFLRCTHPA
ILESREKLQKALRAMNAGDAADQVLRQLDKMMRNNERASREARMNKDDQPSNHLPVSGDA
TKKRATPSDNEDSSINHDLSAKRVRYVPNNHVVPPVERNDSGKDYVNGVPQKAPVAVNAP
NLVEQMISMIGALISEGERGVESLEILIAKIPPDVMADIVITNMRHLPRNPPSFTKFDTL
PLTQQSDFSSAPLNGVVPIGSSVSKQTVALSSQLPVSVSNAVNSSISEMSTSLPPDSKRD
PRRDPRRLDPRRVTVGIGVPPPPIIEDNINPMQPVVQSEVDSSNTFNRPLMVPILPTSEN
MPVSQNPKIEADNTLESLDSALADWSAPKEEIQVEEAERSVPDTEENAIADITFSSAGKL
EQDSMAQMPSNVLMIDEVYSPSSVETDQRSPPISNTIASEDVCDYLPSVPPYIELTEEQQ
RSVETLAIEQIIDSYKRLKGADNKQTGMAMLSCLIAQINAGADVAVMVQKHILSDYQQQK
GHEVVMHVLYHLRTLMLSDSDERSSSAASLYDQVLLGVAKFLLDTFPATDKSFSRLLSEV
PYLPESAMRLLVDLCSENYSGKDGRDGDRVTQGLGAVWGLILGRPPNRQACLDIALKCAV
HSKEDVRAKAIRLVTNKLYVLSHTSENIEQFAMNTFLSAVDNRVSGPEDSISGATNQRKE
VEVGSQETSVSGSQSSDTGISENDSLRGSQFDSQSDSALSSAQAQRLVSLFFALCTKKPS
LLQHVFDNYGRAPKAVKQAIHRHMPILIRAIGSSNPELLHIISDPPQGCENLLTLVITIL
SEGTTPPPDLIAVVKRLYETKLKDASILIPMLSSFSKSEVLPIFPRLVSLPLDKFQIAMA
RILQGSAHTGPALSPAEVLVAIHDINPERDGLPLKKITDACSACFEQRTVFTQQVLAKAL
NQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNRQVWKMPKLWVGFLKCVSQT
QPHSFPVLLQLPPPQLEGALNKYAGLRGPLAAFASQPNIKNSLPRPTLAVLGLLESNLQQ
PHISPSLHPSEASPSVHGATLT
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggccggaccgctgctacgggagcaagtgctccctctcctcgccgccgccaacaaccac
ggcgatttggatgtcaagctctcgtctttgcggcaggttaaggatgtgttgctgtctgct
gacgcgtcgcaggccgccgagattttcccctatttgattgaccttcagtcctcgcccgaa
accatgctgcggaaatacctaattcaggtgattgaggatattgcagcaaaatcaatggag
catgctttgatgttaatgcctgtgttattagcatctttgagagataatagttcattggtt
gtgaagcaatccattgtttctggaacaagcatcttctatggagtggtggaagaattatca
atgcagtttcaccggcgtggtttaatcgagaggtggcttgaagagttttggacatggatg
atcaagttcaaggatgccatctttggaattctgtttgaggctggccctgttggtgtaaga
ttgctggcaataaaatttttggaaatatacgttttacttttcacaccagatgcaactgat
tctgagagatatacatcggaagctccgacaaaatttaggcgggccttcaatatttcttgg
ataattggccatcatcctattatggatccagctgcactgatatctgatgcaaatagaacc
attggcattctattggagcttttgcgctctgcaagttcagttcctggttcactgacgatc
tctgttgttaatagccttgctactattgcaaagaagagacctgctcactacaacttcatt
ctttcggcattgcttgattttgatcccaactttgagatgacaaaaggaggtcatactgcc
agcattcagtattctctgaggacagcatttttaggatttttgagatgtactcatcctgct
attctagagtcaagagagaaactgcaaaaggcattgcgagcaatgaatgctggggatgca
gctgatcaagttctccgtcaactggataaaatgatgagaaacaatgagcgtgcttcacgt
gaggctcgaatgaacaaggatgaccagccatcaaatcatttgcctgtttctggggatgca
acaaagaaaagggccactccttcagataatgaagattcaagtattaatcatgatttgtct
gcaaagagggttcgatatgtgcccaacaatcatgtagttccacctgttgaaagaaatgat
tctggaaaggattatgtcaatggagtgccccaaaaagctcctgtagctgttaatgcccct
aaccttgttgaacaaatgatctccatgataggtgctttaatatcagaaggagaaagaggt
gttgaatctctggaaattctaatagctaaaattccaccagatgtgatggctgatatagtc
ataacaaatatgaggcacttacctagaaaccccccttcattcactaagtttgataccctg
ccattaactcagcaaagtgatttttcaagtgctccattgaatggtgtggtaccaataggt
tcctcagtttccaaacagactgtagctctctcttctcaattacctgtttctgtttcaaat
gctgtgaactcatctatatcagaaatgtcgacttcactacctcctgattctaaacgtgat
cctcgaagggatcctcgtcgccttgacccaaggcgtgtcactgttggaattggagtgcca
ccaccacccatcattgaagataatatcaatccaatgcaacctgtggtgcaatctgaagtt
gattcttctaatacctttaacagaccccttatggtacccatccttccaacttcagaaaat
atgcctgtgtctcagaatcccaaaattgaagctgacaacactttggagagtttagattct
gccttggctgactggtcagctccaaaagaagaaattcaggttgaagaagctgagagaagt
gttcctgacactgaagagaatgctattgcggacataacattctcttctgctggcaaattg
gaacaggactcgatggcacaaatgccatctaatgttttaatgatagatgaggtatactca
ccgtcttcagtagaaactgatcaacgttctccacccatttcaaacacaattgcttctgag
gatgtgtgtgattatttgccttcggttccgccatacattgagctgacagaagagcagcaa
agaagtgttgaaactttggcaattgaacaaataattgactcatacaagaggttaaagggg
gcagataacaaacaaacaggcatggcaatgctttcttgcttgattgcccagattaatgct
ggtgctgatgtagctgtgatggttcaaaagcatattctctcagactatcaacaacaaaag
gggcatgaggtcgtaatgcatgtcctttaccatttgcgcaccctcatgttatcagattca
gatgaacgctcttcatctgctgcttctctgtatgatcaggttcttctgggagtggcaaaa
ttcttattagatacttttccagcaactgacaagtcatttagccgacttctcagtgaagtt
ccttatttgcctgaatctgcgatgcggctactagttgatttatgctctgaaaattattcg
ggaaaagatggtcgtgatggtgaccgtgtcacacagggtcttggtgctgtgtggggcttg
attttgggacggccacccaatcgccaagcctgcttggatattgctttgaagtgtgctgtt
cactcaaaggaagacgttcgagctaaagctatccgcctggtgacaaacaaactctatgtg
ctgagccacacctcggaaaatatcgaacagtttgcaatgaatacattcttgtctgctgta
gataaccgtgtttcaggtccagaagattcaatatctggagccaccaatcagagaaaagag
gtggaggttggaagccaagagacctctgttagtggctctcagagttcagacacaggaatt
tctgaaaatgattcattgaggggttctcagtttgattctcaaagtgattctgcgttgtct
tctgctcaggcacaacgtctagtttcattattttttgctttatgcaccaagaagcccagt
cttcttcaacatgtatttgataattatggaagggctcccaaggctgttaagcaggccatt
catcgccacatgcctattcttattagagcaataggttcttcaaatcctgaactgcttcat
ataatatctgatccaccccaaggatgcgaaaatctgctgacactggtgattactattttg
tcagaagggacaacacctccacctgatctgattgcagttgttaagcgtctatatgaaact
aaactaaaggatgcaagtattcttatcccaatgctctcatccttttctaaaagcgaggtt
ttacctatttttcctcgcctcgtctctcttcctctggacaagtttcagattgcaatggct
cgcatattgcagggttctgctcatacaggtccagcattaagtccagctgaggttttggtt
gccatccatgacattaatcctgagagagatggattgccactaaagaagatcacagatgct
tgctcagcttgctttgagcaacggactgttttcacacaacaagttctggcaaaggccttg
aaccagatggttgatcaaactccccttccactgctcttcatgagaactgtgattcaggca
attgatgcttttcctacgctggttgattttgtcatggagatactgtccaaacttgtaaac
agacaggtgtggaaaatgccaaaattatgggttgggttcttgaaatgtgtctcacaaaca
cagccacactcattccctgtattgttacagttgcctcccccacaactcgaaggtgctttg
aacaaatatgctggcctccgaggtccattggctgcctttgctagtcaaccaaacattaaa
aattcactccccagaccaacattggcggtacttggcctgctcgagtcgaatttgcagcaa
ccgcatatttcgccttctttgcatccatctgaagcaagtccatctgttcatggtgcaacc
ctaacatga
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