Ipomoea triloba (trilobed morning glory): 116027134
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Entry
116027134 CDS
T07384
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116027134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116027134
03019 Messenger RNA biogenesis [BR:
itr03019
]
116027134
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116027134
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116027134
U7-dependent histone pre-mRNA processing factors
116027134
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
116027134
NCBI-ProteinID:
XP_031124429
LinkDB
All DBs
Position
1:1787404..1791874
Genome browser
AA seq
695 aa
AA seq
DB search
MASTGQPQSMSKRPNSAITREADRLIITPLGAGSEVGRSCVYMSYKGKTVLFDCGIHPAY
SGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL
SDYVKVSKVSVEDMLFDEKDINKSMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMV
SIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRHIREKRFTEVIH
NTITQGGRVLIPAFALGRAQELLLILDEYWSSHPELHKIPIYYASPLAKRCMAVYQTYIN
SMNERIRNQFVSSNPFDFKHISPLNSIENFQDTGPCVVMASPGSLQSGLSRQLFDKWCSD
KRNACVIPGYVVEGTLAKTIINEPKEVTLTNGLTAPLHMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGEANEMGRLKQKLTTLFADQNTKIITPKNCQSVEMYFSSEKMAKTIGKL
AEKTPEVGETVSGLLVKKGFTYQILAPEDLHIFSQLSTANVTQRITIPYSGAFAVIRHRI
KQVYESVESSTDEDSGVPTLRVHDRVLVKQESENHLSVHWAADPISDMVSDSVVALVLNA
NREMPKLVVESEPVVNEEEDAKKTEKIIHTLLVSLFGDVKLGENGKIVINVDGNIAELDK
QTGDVESENDGLKERVKTAFRRITSAVKPIPLSAP
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcatctactggacagccacaatcaatgtcaaagagacctaattcagcaataacaaga
gaagcagaccggcttatcattactcctttaggggctgggagtgaagtggggcgatcgtgt
gtttacatgtcttacaaagggaaaacagttttgtttgactgtgggattcatccagcttac
tctggcatggctgctttgccatactttgatgaaattgatccttcaactattgatgttctt
ctaattacccattttcacttggatcatgctgcttccctcccatattttctagaaaagacc
acattcaaaggacgagttttcatgacccatgcaacaaaggcgatttataaattgttatta
tcggattatgttaaagtaagcaaggtctctgttgaagatatgctatttgatgaaaaagac
atcaataaatccatggacaaaattgaggttattgacttccaccagacaatggaagttaat
ggtatccgcttctggtgctatactgctggtcatgttcttggtgctgccatgtttatggtc
agcattgccggtgttcgagttctttacactggagactattctcgtgaagaagaccgacat
cttcgtgctgcagagctcccacagttttctccagacatttgcattatcgaatcaacatat
ggtgttcaacaacatcaaccccgacacatacgagagaagcgctttactgaagtcatacac
aacactattactcaaggtggtcgtgttctaatccctgcttttgcgctgggtcgtgctcaa
gaacttctccttatactggatgagtattggtcaagccatccagagctccataagatcccc
atatattatgcttcaccacttgcaaaaagatgtatggctgtttatcaaacctatataaat
tccatgaatgagaggatccgcaatcagtttgtcagctcaaaccccttcgatttcaaacac
atctctcctctgaacagtattgaaaattttcaggatacaggaccatgtgtggtgatggca
agtccaggtagtcttcagagtgggttgtcaaggcagctgtttgacaaatggtgctctgat
aagagaaatgcctgtgttattcctggatatgtggttgaagggacacttgcgaagacaatt
atcaatgaaccaaaagaggtcacacttacaaatggcttgactgctcctctgcacatgcag
gttcattatatttcattctcagctcatgcagactatgctcagacaagtacattcttgaaa
gagctaatgccacctaacataattctggttcatggagaagctaatgaaatgggaaggctc
aagcagaagcttaccaccctatttgctgatcagaacaccaaaattattactccaaaaaac
tgccaatctgtggaaatgtacttcagctctgagaaaatggcaaaaactattggaaaactg
gcagaaaagacccctgaagttggtgaaactgtcagtggtttacttgttaaaaaaggcttc
acataccagatcctggcacctgaagatctccacatcttctctcagctttcaactgcaaat
gtcactcagagaattactatcccatattcaggtgcctttgctgtgattagacaccggatc
aaacaagtttatgagagtgttgagtcttcaacagatgaggattctggtgttccaacacta
cgggttcatgatagagttctagttaaacaggagtcagagaatcacctttctgtgcattgg
gcagctgatcctattagtgatatggtctcagactctgttgtagcattggttttaaatgca
aacagagaaatgcctaagttggttgtggaatcagaacctgtagtaaatgaggaggaagat
gcaaagaaaacagagaaaattattcacacactgttggtctctttgtttggtgatgtaaaa
cttggggagaatggcaaaattgttataaatgtcgatgggaacatagcagaacttgacaaa
cagactggcgatgttgaaagtgaaaacgatggcctcaaggaacgagttaaaacagcattt
aggcgaatcacaagtgctgtgaagcccatccctctctcagcaccttag
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