Ipomoea triloba (trilobed morning glory): 116027290
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Entry
116027290 CDS
T07384
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03013
Nucleocytoplasmic transport
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116027290
09122 Translation
03013 Nucleocytoplasmic transport
116027290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116027290
03041 Spliceosome [BR:
itr03041
]
116027290
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116027290
Spliceosome [BR:
itr03041
]
Complex C
Other components
EJC/TREX
116027290
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116027290
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_EML_2
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_2nd
Beta-prop_NOL10_N
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
DSE1_N
Beta-prop_WDR75_1st
eIF2A
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_HPS5
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_IFT80_2nd
TRM82_WD
Tricorn_2nd
Beta-prop_NUP159_NUP214
PAC11
WDR90_beta-prop_4th
Beta-prop_WDR41
TP_0598_N
CFAP251_N
B-prop_COPA_B_2nd
Beta-prop_Nup120_160
Beta-prop_ACSF4
WD_LRWD1
DUF7099
Beta-prop_WDR11_1st
CNH
Motif
Other DBs
NCBI-GeneID:
116027290
NCBI-ProteinID:
XP_031124678
LinkDB
All DBs
Position
8:complement(15634869..15641835)
Genome browser
AA seq
313 aa
AA seq
DB search
MAESIPFKNLHTREYQGHKKKVHSVAWNCTGTKLASGSVDQTARIWHIEPHGHGKAKDIE
LKGHTDSVDQLCWDPKHAELIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGT
HIAVGNREDELTILDVRKFKAMHKRKFNYEVNEIAWNMTGDMFFLTTGNGTVEVLSYPSL
RPVDTLMAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDIKEMLCVRTFTKLEWPVRTISF
NHTGEYIASASEDLFIDISNVQTGRSVHQIPCRAAMNSVEWNPKLNLLAHAGDDKNKYQA
DEGVFRIFGFESA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatcaatacccttcaaaaacctccatactagagaatatcaaggccacaagaag
aaggttcattcagtagcatggaattgcactggcacgaaactagcctcgggctccgttgat
caaactgctcgaatatggcatattgagccccatggtcatggaaaggcaaaagatattgaa
ctaaaaggccatacagacagtgtggaccaattatgttgggaccccaagcatgctgagttg
attgcaacagcatcgggtgacaagacagttcgattgtgggatgctcgcagtggcaaatgc
tcacagcaagttgaattaagtggggagaatatcaatatcacttataaacctgatgggact
catatagctgttggcaacagggaagatgaactgacaatattggatgttcgcaagtttaag
gctatgcataagcggaagttcaactatgaggtaaatgagattgcatggaatatgaccgga
gatatgttctttctgactactgggaatggaacggtggaggttctatcatatccttctctg
cgccctgttgacacacttatggctcacactgctggttgttattgcattgcaattgaccca
cttggaagatattttgctgttggaagtgctgattccttagtcagcctttgggatattaag
gaaatgctctgtgttcgaacatttacaaaacttgaatggccagttaggacaataagtttc
aatcatacgggagaatacattgcctctgcaagtgaggatttgttcatagatatatcaaat
gtccagactgggcggtcagttcaccagattccctgtcgtgctgcaatgaacagtgtggag
tggaacccaaagttaaacttgcttgctcatgctggagatgataaaaacaagtatcaagct
gatgaaggtgtgtttcgtatattcggctttgagagtgcataa
DBGET
integrated database retrieval system
