Ipomoea triloba (trilobed morning glory): 116027474
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Entry
116027474 CDS
T07384
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116027474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116027474
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116027474
U7-dependent histone pre-mRNA processing factors
116027474
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
Beta-Casp
CPSF100_C
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
116027474
NCBI-ProteinID:
XP_031124986
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Position
8:complement(16310557..16320002)
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AA seq
741 aa
AA seq
DB search
MGTSVQVKPLCGVYNENPLSYLVSVDGFNFLIDCGWNDHFDTSLLQPLSRVASTVDAVLL
SYPDTLHLGALPYAMKHFGLAAPVYATEPVYRLGLLTMYDQYLSRKQVSDFDLFTLDDID
FAFQSVTRLTYSQNYHMSGKGEGVVIAPHVSGHLLGGTVWKITKDGEDVIYAVDFNHRKE
RLLNGTILESFVRPAVLITDAYNALSNQPSRRQRDQEFLDSIEKTLNAGGKVLLPVDTTG
RVLELILLLEQHWHQKGLSYSIFFLTYVASSTIDYVKSFLEWMSDSIAKSFEDRRDNAFV
LKHITLLVNKSELEKLPEGPKVVLASMASLEAGFSHDIFVEWATDTRNLVLFTERGQFGT
LARMLQSDPPPKVVKVTMSKRIPLVGEELAAYEEEQNRVKEEALKASMVKDEESKASLGV
DTLTSDPMVIDSSNVKHTSLNAISLQVGPYKDVLIDGFVLPSSSVAPMFPCYVKSSDWDD
FGEVINPDDYVIQEEHTELSLIPVDGDLHGKLDEGSASLIFDTTPSKVVSSELTVQVKCS
LVYMDFEGRSDGRSIKSILAHVAPLKLVLVHGTAEATEHLKQHCLKHVCPHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTDTGMLSLLPLSDPAPPHK
TVLVGDLKLSDFKQFLASKGVQVEFAGGALRCGEYVTLRKVGDASQRGGGAAAIQHIILE
GPLSEEYYTIREYLYSQFYSL
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgggaacctcagtgcaggtgaagccattgtgtggagtgtataacgaaaaccctctctcc
taccttgtctccgttgatggctttaacttccttattgactgtggttggaatgaccacttt
gatacctctcttctccaacccctgtccagggtagcgtcaacagtggatgccgtgctgctc
tcgtatccagacacccttcaccttggtgccctgccctatgccatgaaacactttggatta
gctgctcctgtttacgccactgaacctgtttatagattaggattattaactatgtatgat
caatatctctcgcgtaagcaagtgtccgattttgatttgtttactctggatgacattgat
tttgcattccaaagtgtcaccagattaacctactctcagaactatcatatgtccgggaaa
ggtgaaggagttgtcattgctccacatgtatctggtcatctactaggtggtacagtctgg
aagataacaaaagatggggaagatgttatatatgctgttgactttaatcatcgcaaagaa
aggcttttaaatggaaccattttagagtcttttgttcgccctgctgtcctaattactgat
gcctataatgctttgagcaaccagccttcaagacgtcagagggatcaagaatttctagat
agcattgagaagactctaaatgctggtggaaaagtattactacctgtagatactactggt
cgtgtattggaactcattttgttgctagagcagcactggcatcaaaagggtttgagctat
tccatcttttttctcacatatgttgcatcaagtacaattgactatgtcaagagcttcctt
gagtggatgagtgattcaatagccaagtcttttgaggacagacgagataatgcttttgtt
ttgaagcatatcacacttttggtaaacaagagtgagcttgaaaagttgccagaaggtccc
aaggtggttctggcatccatggcaagtctagaggctggattttcacatgatatatttgtt
gaatgggctactgatacaaggaatcttgttttattcaccgaaagagggcagtttggcaca
ctagcacgtatgcttcagtctgatccacctcctaaagtagttaaagttaccatgtcaaag
aggatacctttggttggagaagagctagctgcttatgaggaggagcaaaatagggtaaag
gaggaagctctcaaagctagtatggttaaagatgaagaatcaaaagcatctcttggagtt
gacactcttacgagtgacccaatggtcattgattcatctaatgtcaaacatacttcatta
aatgctatcagtctacaagttggtccttacaaggatgtattgattgatggatttgttcta
ccttcttctagtgtcgcaccaatgtttccctgctatgttaagtcctctgattgggatgat
tttggtgaagtcatcaatcctgatgattatgtcatccaggaagaacatacggagctatca
ttgatacctgttgatggagatcttcatggaaaacttgatgagggatctgctagcctgata
tttgatactacaccatcaaaagttgtatcttctgagttaactgtccaagtcaagtgttcc
ttggtttacatggattttgaagggcgctctgatggtcgttcaattaaatctattcttgcc
catgttgctcccttaaagcttgttttggtacatggcacagctgaagcaacagagcatttg
aaacaacattgtctgaagcatgtatgcccacatgtttatgctccccaaattgaagaaacg
attgatgttacttcagatttgtgtgcttataaggtgcaactatccgagaaattaatgagc
aatgtgctgtttaagaaacttggagactatgaagtagcatgggttgatgctgaagtgggg
aaaacagacactggcatgttgtctttacttcctctttcagatcccgctccaccacataag
acggtacttgttggagacctaaaactctcagatttcaagcagtttcttgcaagcaagggt
gtgcaggtagaatttgcaggtggagccttacggtgtggggagtatgtgactttgcgaaaa
gtaggagatgcaagccaaagggggggtggtgctgctgctatacaacatatcattcttgag
gggccactttctgaagaatattacacaattcgggagtatttatattcacaattttattcc
ctctaa
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