Ipomoea triloba (trilobed morning glory): 116028422
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Entry
116028422 CDS
T07384
Name
(RefSeq) cleavage stimulation factor subunit 77-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116028422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116028422
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
116028422
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_CcmH_CycH
TPR_15
TPR_Slam
TPR_16
TPR_2
TPR_9
Motif
Other DBs
NCBI-GeneID:
116028422
NCBI-ProteinID:
XP_031125998
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Position
9:complement(1103204..1110624)
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AA seq
722 aa
AA seq
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MADSKYNVEAAEIVANEAMRLPIAEAVPIYEQLLSTFPTAAKYWKQYVEAHMAVNNDDAT
KQIFSRCLLNCLQIPLWRCYIRFIRKVNDKRGTDGQEETKKAYEFMLNYVGADIASGPVW
MEYIAYLKSFPALTAQDESQRMTAVRKAYQRAIVTPTHHVEQLWRDYENFENSISRALAK
GLISEYQPKYNSAKAVYREMKKYIDEIDWNMLAVPPSGSSKEEMQWTAWKRFLAFEKGNP
QRIDTASANKRIVFAYEQCLMYLYHYPDIWYDYATWHAKCGSVDSAIKVYQRSLKALPDS
EMLRYAYAELEESRGAIQAAKKVYESLMGDGTNATALSLIQFIRFLRRTEGVEAARKYFL
DARKSPNCTYHVYVAQAMMEFCLNKDAKVARNVFEAGLKNFMHEPEYILEYADFLSRLND
DINIRALFERALSSLPPEESLEVWKRFSQFEQIYGDLASMLKVEQRRKEALRTGDDEASI
LESSLQDIVSRYSFKDLWPCSSTALDYLSRQEVLVRNMNKKIEKSTAGVETDGSMPGVSS
NTNSAKFVRPDPSKMAIYNPKQTPGTLPYSGVQLNSNGQPPNVMGDVLKSLPPALAAFIS
NLPSVEGPSPDTDFVISVCLQSNIPSVTGKPGAVSHPAQSGSVPSTSDLSDSSKFKTRDR
LPGKRKNMDRQDDDDTSTVQSQPLPRDLFKIRQLHKSRVSSSHTGSVSYGSAISGELSGS
TS
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagtaagtacaatgttgaagctgcagaaattgtcgccaacgaggcaatgcgt
ttgccaattgctgaggcagtgcctatatatgagcaactgctgtctacttttcctactgct
gcgaaatattggaagcagtatgtcgaggcacatatggctgtaaataatgatgatgccaca
aagcaaattttcagtcgttgtttattaaactgtttgcaaattcctctttggcgctgttat
attcgttttatcagaaaagtaaatgataagaggggaactgacggtcaggaagagaccaag
aaagcttatgagttcatgcttaactacgttggagcagacattgcctcaggccccgtctgg
atggagtacattgcatacttaaagtcctttcctgctctaactgcacaagatgaatctcaa
agaatgactgcagtaaggaaagcataccaaagagctattgttacgccaacccatcatgtt
gaacaactttggagggactacgagaattttgaaaattcaattagccgagctctggcaaaa
ggtcttatatctgagtatcagccgaaatataatagtgcaaaggcagtttacagagagatg
aaaaagtatattgatgaaattgactggaatatgcttgctgtgccaccttctggttcttcc
aaggaagaaatgcagtggacggcatggaaaaggttcctagcctttgaaaaaggaaatcct
caaaggatagatactgcttctgctaataaaagaattgtcttcgcatacgagcagtgcctc
atgtacttgtatcattatcctgacatatggtatgactatgctacctggcacgcaaagtgt
ggttcagtagactctgcaataaaagtttaccagcggtctttaaaggctttacctgattca
gagatgctgagatatgcttatgctgaacttgaagaatctcgtggagccattcaggctgca
aagaaggtgtacgaaagtcttatgggagatggaactaatgccacggcactatcacttatc
cagttcattcggttcttaaggaggacagaaggagttgaagcagctcgcaagtactttctt
gatgcacgcaaatcaccaaattgcacttatcatgtttatgtagctcaggcaatgatggaa
ttctgtcttaacaaggatgctaaggtggcacgtaatgtgtttgaagcagggttgaaaaac
tttatgcatgaacctgaatacattcttgagtatgcagatttcctttctcgtttgaatgat
gatattaatattagggctttgtttgaacgggcattgagctctcttccacctgaggaatct
cttgaggtttggaaaagattctctcaattcgagcagatttatggtgatcttgccagcatg
ttgaaggttgagcaaagaagaaaagaagcccttaggacaggtgacgatgaagcatcaata
ttagagagttcactgcaagatattgtatcacgctatagttttaaggatctgtggccttgc
tcttccacggcactggattatctttcacggcaagaggtgcttgtaaggaacatgaataag
aagattgagaaatcaacagctggtgttgagacagatgggagtatgccaggagtttcatcc
aatacaaactctgccaagtttgtgcgtccagatccttctaaaatggctatttataatcca
aagcaaacaccaggcaccttgccttattctggcgttcaattaaacagtaacgggcaacca
ccaaatgtgatgggtgatgttctgaaatcattgccacctgcattggcagcattcatatca
aatttgccatctgttgagggtccatctccagatactgattttgtgatatctgtgtgcctg
caaagcaacattccttcagttacaggcaaaccaggggctgtgtctcatccagcgcagtca
gggtctgttccatctacgagcgacctgtctgattcaagcaaattcaaaacaagagacaga
ctacctggaaagaggaaaaatatggacaggcaagatgatgatgacacatcgactgtgcag
agccagcctctacctagagatcttttcaagattcgacaactacacaagtctcgggtttcc
agttcacacacaggatcggtatcatatgggagtgcaatttctggagagctctctggcagc
accagttga
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