Ipomoea triloba (trilobed morning glory): 116029263
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Entry
116029263 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116029263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116029263
03041 Spliceosome [BR:
itr03041
]
116029263
03009 Ribosome biogenesis [BR:
itr03009
]
116029263
03016 Transfer RNA biogenesis [BR:
itr03016
]
116029263
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116029263
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116029263
Spliceosome [BR:
itr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116029263
Complex C
U4/U6.U5 tri-SnRNP related factors
116029263
Ribosome biogenesis [BR:
itr03009
]
Eukaryotic type
Pre-60S particles
Helicases
116029263
Transfer RNA biogenesis [BR:
itr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116029263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
YBL028C_N
Motif
Other DBs
NCBI-GeneID:
116029263
NCBI-ProteinID:
XP_031127041
LinkDB
All DBs
Position
9:2728115..2735575
Genome browser
AA seq
993 aa
AA seq
DB search
MGSVKRKSIEDPSDTSRPEKQLREDSLLGLDEQVACVHDVSYPEGYVPHAPSSAKTEESL
KPAKEFPFTLDPFQSEAIKCLNNGESVMVSAHTSAGKTVVALYAIAMSLKNNQRVIYTSP
IKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEVTREVAWII
FDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTD
YRPTPLQHYMFPSGGDGLYLVVDEKGKFREESFQKALNALVPASEGGRKRENGKWQKGLV
VGKAGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKVNIESIF
WSAMDMLSDDDRKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATET
FSIGLNMPARTVVFSNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDEKLE
PSTAKLMLKGSADPLNSAFHLSYNMLLNQIRCEDGDPENLLRNSFYQFQADQAIPDLQKQ
AKILAEERDSIVLEEEDSLEDYYSLLQQHKSLKNDVRDIVFSPKYCLPFLQPGRLAGVYC
TNTNENVPSFSIKENVTWGVIINFEMVKGLSKDDEDKKPEDANYTVDILTRCMVHKDELG
KKSTKIVPLKDPGEAAVVSVPLSKIDSLSSVRLKIPKDLIPLEARAHTLKKVSEVLSRYA
KEGGMPLLHPEDDMKVKNSSYSKAARRIEALESQFEKHDISKSPIIEEKLKVLHKKKELT
ARIKSIKKSLRSSSVLAFKDELKARKRVLRRLGYISRDDVVELKGKVACEISSADELTLT
ELMFNGVFKEIKVEEMVSLLSCFVWQEKLQDAQKPRDELELLFTQLQDAAWKVAKVQLEC
KVQIDVENFVSSFRPDIMEAIYAWAKGSKFYEIMEFTQVFEGSLIRAIRRLEEVLQQLIQ
AAQSIGETELESKFEDAVSKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggttcagtgaagaggaagtcaatagaagacccgagtgatacaagtagacctgaaaag
cagctgagagaggatagtttactgggtttggatgagcaagtggcttgtgtgcatgatgtt
tcgtacccggaaggctatgtccctcatgctccaagttcagctaagactgaagaaagctta
aaacctgcaaaggagttcccttttacacttgatcctttccaatccgaagcaattaagtgc
cttaacaatggtgaatctgtcatggtgtcagcacacacatcagctggtaagacggttgtg
gctctgtatgcaattgctatgtcattgaagaataatcagcgtgtgatttacacttcacca
atcaaagcacttagtaatcaaaagtacagagagtttaaagaagagttttctgatgtggga
ttgatgactggagatgtaaccattgaacccaatgcttcttgcttggtaatgaccacagaa
atctggcgaagcatgcagtacaagggatcagaggttacaagggaggtggcgtggattatt
tttgatgaggtacactacatgcgtgatagagaacggggtgtagtttgggaggagagtatt
gtgatggctccaaagaattctcgatttgtatttctctcagctactgtgcctaatgccaag
gagtttgcagattgggttgcgaaggtccaccagcaaccctgtcatattgtttatacagac
tatcgacctacacctcttcagcactacatgtttccttctggtggtgatggtctatacttg
gtggttgatgaaaagggaaaatttcgtgaggaaagcttccagaaagctttaaatgctctt
gttcctgctagtgaggggggtcgaaaaagggaaaatggaaaatggcagaagggtttggtt
gttggtaaagcgggtgaggatagtgatatatttaaaatggtgaaaatgattattcaacgt
caatatgatcccgtaatatgttttagcttcagcaaaagagaatgtgaatttcttgcaatg
cagatggctaaaatggatttaaacaatgatgatgagaaggtgaacattgaaagtatattt
tggagtgctatggacatgttgtctgatgatgatagaaagctaccacaagtttcaaacatg
ctacccttactgaaacgtggaatcggtgtacatcattctgggttgcttcctatactgaaa
gaagtgattgaaatcctattccaagaagggtttattaagtgtttgtttgccacagagacc
tttagcatagggttaaacatgcctgcaagaactgttgtcttctcaaatgtgcgcaaattt
gatggagataagtttagatggatatccagtggtgaatatatacaaatgagtgggcgtgct
ggtcgtcgaggaattgatgaccgggggatttgcatcctgatggttgatgagaagcttgaa
ccttctacagctaaattgatgctaaaaggaagtgctgatccattgaatagtgctttccac
cttagctacaacatgctgttaaatcagatacgatgtgaagatggtgatcctgaaaatttg
cttaggaattcattttatcaatttcaggcagaccaagcaattcctgatcttcagaagcaa
gcaaaaatacttgcagaagagagagactcaattgttcttgaagaagaagatagcttggag
gattattactctctgttacaacagcacaagagcctaaaaaacgatgttcgtgacatagtc
ttctctccaaagtattgcttaccttttctgcagcctggcaggcttgcaggtgtatactgt
acaaatacaaatgaaaatgttccctccttctccattaaagaaaacgtgacatggggagtc
ataattaactttgagatggtaaaaggcctttctaaagatgatgaagataagaaaccagag
gatgccaactacacagtagatattcttactagatgtatggtgcataaagatgaacttggt
aaaaaatccactaaaattgttcccttaaaggatcctggggaagctgctgttgtttctgtt
ccattatccaagattgacagtttgagtagtgttcgcctgaaaataccaaaggaccttata
ccattggaagctcgagctcataccttgaaaaaggtttctgaagttctctctagatatgct
aaagaaggtggcatgcctctcttacacccagaagatgacatgaaggttaaaaatagctca
tacagtaaggctgcacgcaggatagaggcgttggagagccagtttgaaaagcatgacata
tcaaaatcacctattattgaggaaaagcttaaagttttgcacaaaaagaaagagcttaca
gccagaatcaaatcaatcaagaaatcattgcgttcatcctctgtcttagctttcaaagat
gaacttaaagccaggaaaagagtcctcaggagacttggatacatcagcagagatgatgtt
gtagagttgaaggggaaagtagcctgtgaaatcagcagtgcggatgaactgactctgact
gagcttatgtttaatggtgtgttcaaggaaattaaagtagaggagatggtatctctgctt
tcttgttttgtgtggcaagagaaacttcaggatgctcaaaagccccgggatgagcttgag
ttgctgttcacacaattacaagatgcagcttggaaggtcgccaaagttcagctcgagtgc
aaggttcaaatagatgttgagaactttgtgagttctttccgacctgacatcatggaagct
atctatgcttgggctaagggatccaaattttacgagatcatggaattcactcaggtcttt
gaaggcagtttaattagggctatcaggagattggaggaagttcttcaacaactaatacaa
gctgcacaatctatcggagaaaccgaacttgaatccaaatttgaagatgccgttagcaag
atcaagagggatatcgtctttgctgcatcgctttacttgtaa
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