Ipomoea triloba (trilobed morning glory): 116029385
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Entry
116029385 CDS
T07384
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116029385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116029385
03016 Transfer RNA biogenesis [BR:
itr03016
]
116029385
Enzymes [BR:
itr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
116029385
Messenger RNA biogenesis [BR:
itr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
116029385
Transfer RNA biogenesis [BR:
itr03016
]
Prokaryotic type
tRNA degradation factors
116029385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
Cbl_N
Motif
Other DBs
NCBI-GeneID:
116029385
NCBI-ProteinID:
XP_031127226
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All DBs
Position
9:7146487..7158484
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AA seq
930 aa
AA seq
DB search
MLANPTFHGRPLHFTPTTARYRFLPLQLTPSSIARRRAPTRRRKSGKLCYQLAVRATSDA
ASSSSVSASPVSLPRPYSVRIPVGDRYITVETGHIGRQASGAVTVTDGETIIYTTVCLAD
DPSEPSDFFPLSVQYQEKFSAAGRTSGGFFKREGRAKDHEVHICRLIDRPLRPTMLKGFY
HEVQVLSWVLSYDGLHPPDSLALTAAGIAMAISEVPNSKAIAGVRIGLIGDKFIVNPTTE
EMEESKLDLLLAGTDDAILMIEGYCDFLPEEKLLEAVQVGQDAVQAICKEVEALVKNCGK
PKMLDAIKLPPPELYNLVEEIVGTELVEVLQIKNKIPRRKALALLESKVKSILSEKGYVS
KMEEFVSNELIPDLLEDEDEDEEVVVDGEVDEGDVHIKPVGRKSIPLLYSEVDVKLVFKE
VTSKFLRKRIVEGGKRSDGRTSQELRPINSCCGLLPRAHGSALFTRGETQSLAVVTLGDK
QMAQKIDNLVDEDEYKRFYLQYSFPPSCVGEVGRVGAPSRREIGHGMLAERALEPILPSD
DDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGLVLDTKEFGGD
GTPLILSDITGSEDASGDMDFKVAGNADGITAFQMDIKVAGITLPIMKQALLQAKDGRKK
LLAEMSKCSPPPSKMLSKYAPIIHVMKIKPEKINLIIGSGGKRVKSIIEETGVEAIETQD
DGVVKITAKDLTTLERAKAIISNLVIVPTVGDIYRNCEIKSIAPYGVFIEISPGREGLCH
ISELSESWLAKAEDVVKVGDRVDVKLIEINDKGQLRLSRRALLPNPDPEKPKQQAASLAK
DTSVSQKSLEKSKTKSSASKDALEMANANPAKDKNSTLENKKPPKEFAKKSVSPVKDGQN
TDKDKAMKGSDKSVSSKSEGALVNGEAKVG
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgttggcaaaccctaccttccatggccggcctctgcacttcacgcctaccacagctcgc
tacagattccttcctctgcaactcacgccttcctccattgcaagaagaagagctccgact
agaagaagaaagagcggcaagctatgttatcagttggctgttcgagctacttcggacgca
gcgtcgtcttcgtcggtttctgcctctcctgtctccctgccccgcccctattcagtcagg
attcctgttggagaccgttatataacggttgagacaggtcatatcggcaggcaagctagt
ggcgcagttactgtaacggatggggaaactattatctatacaactgtatgcttagctgat
gatccaagcgagccttctgatttcttccctttatctgttcaatatcaagaaaaattttcg
gcagctggtcgcaccagtggaggatttttcaaacgagaagggagagcaaaggatcacgag
gttcacatttgtaggttgatagatcgacctctacggccaactatgcttaagggattctac
catgaagttcaagtactttcttgggtattaagttatgatggtttgcacccccctgattct
ttggcattgacagctgctggaattgccatggccatatcagaagtaccaaattcaaaggcc
attgctggagtccgaattggtcttattggtgacaagttcattgtaaatccaaccactgag
gagatggaggaatcaaagttggatttgttactagcaggcacagatgatgcaatattgatg
attgagggatactgtgattttcttcctgaggaaaagttgcttgaagctgtacaagtggga
caggatgctgtacaggccatatgcaaggaggttgaagctttagtgaagaattgtggaaag
ccaaaaatgcttgatgcaatcaagttacctcctccagaactctataatttagttgaagaa
attgttggtacagaattagtggaagtgctacaaataaaaaacaagattcctagaaggaag
gcactagcgttattggagtctaaggttaaaagtatactttcagaaaagggctatgttagc
aagatggaggagtttgtatcgaatgaactgataccagatttgttggaagatgaagatgag
gatgaagaagttgttgttgatggtgaagttgatgaaggtgatgttcacataaagccggtt
ggaaggaaatccattcccttgttatattcagaggttgatgtgaagctggtatttaaagag
gttacatccaaatttttgcgcaagcggattgtggagggtgggaagagaagtgatggaaga
acttctcaggagttacggccaatcaattcgtgctgtggactacttcctagagcacatgga
agtgctctttttacccgaggagaaacgcagtccttagcagtggttacacttggtgacaaa
caaatggcacaaaaaattgacaaccttgttgatgaagatgaatataagagattctatctc
cagtactcgtttccgccttcatgcgttggtgaagttggacgggtgggagcaccatctagg
agggagattggtcatggaatgctggcagaaagagcattagagcctatattgccttctgac
gatgattttccttatacagtacgtgttgagagtactataactgaaagcaatggctcgtca
agtatggcatctgtgtgtggggggtgcttagcattgcaggatgctggtgttcctgtaaag
tactctattgctggtatagccatgggtttggttttggacactaaagaatttgggggagat
ggaactccactaattctctcagacatcactggatcagaggatgcatcaggcgatatggat
tttaaggttgctggaaatgccgatggcatcaccgcattccaaatggatataaaggtggca
ggaattacattaccaatcatgaagcaggctctcttacaagcgaaagatggtcgaaaaaaa
ctgcttgctgagatgtcaaaatgctcaccacctccttcaaaaatgctctcaaaatacgct
ccaataattcatgtgatgaagatcaaacccgagaaaataaacctcattattggttccggt
gggaaaagagtgaagagcattattgaagaaacaggggttgaagctattgagacacaagat
gatggagttgtgaagataactgcaaaagatttgacaactttggaaagggccaaagccatt
atcagtaatctcgtaattgttccaactgttggtgacatatacaggaactgtgagataaag
tcaattgctccttatggagttttcatagagatttcccctggacgagagggactatgccat
attagtgagttgagtgaaagttggctggctaaagcggaagatgtggttaaagtaggagac
cgtgttgacgtcaaacttattgagatcaatgacaaaggacaacttaggttaagccgtcgt
gccttgttgcccaatcctgacccagagaaacccaagcaacaagctgctagccttgcaaag
gacacttctgtttcacagaaatctcttgagaaaagtaaaactaagtcaagtgcgtcaaag
gatgctttagaaatggcgaatgctaatccagctaaggataagaattccacattagaaaat
aaaaagccacccaaggaatttgccaagaaatccgtcagccctgtgaaggatgggcaaaat
actgacaaagacaaggcaatgaaaggaagtgataaatcagtctccagtaaaagtgaaggt
gcactggtgaatggagaggccaaagttggctag
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