Ipomoea triloba (trilobed morning glory): 116029412
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Entry
116029412 CDS
T07384
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116029412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116029412
03041 Spliceosome [BR:
itr03041
]
116029412
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116029412
Spliceosome [BR:
itr03041
]
Complex B
Other components
Prp19-related factors
116029412
Complex C
116029412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
NRDE-2
ARM_TT21_C
ARM_TT21
Imm5
Motif
Other DBs
NCBI-GeneID:
116029412
NCBI-ProteinID:
XP_031127266
LinkDB
All DBs
Position
9:complement(28935008..28940075)
Genome browser
AA seq
913 aa
AA seq
DB search
MAIPKELYPSENDLPYEEELLRNPFGLKLWWRYLVARADAPFKKRAIIYERALKALPGSY
KLWHAYLRERLELVRNLPVTNSQYQTLNNTFERALVTMHKMPRIWIMYLQTLTEQKLLTR
TRRTFDRALCALPVTQHDRIWAPYLYFVSQRGVPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSELWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSESDVEDEEGNGEKGVAEEDEEDDRLNVAKLEKKLKNFWLNDDKDVDLRLARL
EYLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTFTEAVRTIDPMKAVGKP
HTLWVAFAKLYEKHKDVANARVIFDKAVQVNYKTVDHLAAVWCEWAEMELRHKNFKHALE
LMRRATAEPSVEVKRRVAADGNEPVQMRLHKSLRLWTFYVDLEESLGTLESTKAVYERIL
DLKIATPQIIINYAMLLEDHKFFEDAFKVYERGVKIFKYPHVKDIWTTYLSKFVKRYGKS
KLERARELFEHAVEVAPADAVKPLFLQYAKLEEDYGLAKRAMRVYDLATKAVPANEKLSM
YEIYIARAAEIFGVPKTREIYEQAINSGLPDKDVKTMCLKYAELEKSLGEIDRARVLYKY
ASNYADPRSDPGFWDKWNEFEVQHGNEDTFREMLRVKRSVSASYSQTHNILPELLMQKDQ
MQTLEEAKDVLKQAGVDDDQMAAIERQLEPNVDETATRDKSRVVGFVSAGVVESGAQKTT
ANNEDIELPEESDSEGEEDDDGKVEIAQKDVPDAVFGGLVRKREESEKDDGGDGSDSHLG
ALERIKRRRQAAS
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggctattcctaaagaattgtatccatcggagaatgacctcccctatgaggaagagctc
ctcaggaacccattcggcttaaaattgtggtggcgatacttggtggctcgagcagatgcc
cctttcaagaagcgtgctatcatctacgagcgtgccctgaaagctctccctggcagctac
aagctctggcatgcttatctcagggagcgccttgagcttgtccgcaacctccctgtcacc
aactctcaataccaaaccctaaacaacacctttgagagagcccttgtcactatgcacaag
atgccccgcatttggatcatgtacttgcaaaccctaacggagcagaagctgctgacccgc
acccgccgcacgtttgaccgtgcattgtgtgcgctgccggtgactcaacatgatcggatt
tgggcgccctatttgtattttgtcagtcagaggggggtcccaattgagacatcgctccgg
gtttacagacggtacttgaagtatgacccctcccacattgaggacttcattgagttcttg
gtgaattcagagttatggcaggaggctgcagaaaggttggctggagtattgaatgatgac
cagttctattcaattaagggaaagacgaagcatcggctgtggttggagctgtgtgatttg
ttgactcagcatgctactgaaatttcggggttgaatgtggatgcaattattaggggaggg
attcgcaagttcacggatgaggttggaaggctatggacctccttggctgattattacatc
cgaagaaaactagttgagaaggcaagggacatttttgaggagggaatgaccacagttgtg
actgttcgagattttagtgtaatttttgatgcatattcgcagtttgaggagagtatgcta
gctctaaagatggaggagatgagcgagagtgacgtggaggatgaggagggtaatggtgag
aaaggggtagcggaggaagatgaggaggatgatagattaaatgtagcaaaactagagaaa
aaacttaagaatttttggttgaatgatgataaggatgttgatttgagattagcgaggcta
gagtatcttatggataggaggccggagcttgctaacagtgtgcttctcagacaaaatcca
cacaatgtagagcaatggcatagaagggtgaagctttttgaagggaatcccacacggcaa
atactgacttttaccgaggcagtgaggacaatagacccaatgaaggctgtagggaagccg
catacactgtgggttgcatttgcaaagctctatgagaaacataaggatgttgcaaatgct
agggtgatatttgacaaggcagtgcaggtcaactacaagactgtggatcaccttgctgct
gtctggtgtgaatgggctgagatggaacttaggcacaaaaattttaaacatgcacttgaa
ctgatgaggcgtgctactgcagaaccatctgttgaggtcaaaaggagagttgctgctgat
ggcaatgaaccagttcagatgagacttcataaatcccttaggctttggacgttctatgtg
gatttggaggagagcctgggtacattagagtcaactaaggcagtctatgagaggattttg
gatcttaagattgccacaccccaaatcattattaattatgcaatgcttttggaggatcat
aaattctttgaggatgcatttaaagtttatgagagaggcgtcaagatttttaaataccca
catgtgaaggacatatggactacctatctttccaagtttgtcaaaagatatgggaagtca
aaattagaacgagctcgagaattatttgagcatgctgttgaagtggcccctgctgatgcg
gtcaagccattgtttttgcaatatgctaaactagaggaagactatggtcttgccaagagg
gccatgagggtttatgatctagctaccaaagctgttccagctaatgagaaattaagcatg
tatgagatttacatagctcgcgctgctgagatctttggggttcctaaaacaagagaaata
tatgagcaggcaattaattcaggacttccggacaaggatgtgaaaaccatgtgcctaaag
tatgctgaacttgagaagagtctgggagagattgatcgtgcccgtgtattatacaagtat
gcatctaactatgcagacccgcgatctgaccctggcttctgggataaatggaatgaattt
gaggtgcaacatggaaatgaggacaccttccgtgagatgctccgtgtaaagagaagtgta
tctgccagctatagtcagacacacaacattcttcccgaactcctcatgcagaaggatcag
atgcagacacttgaggaagcgaaggatgtgttgaaacaggcaggagtcgatgatgaccaa
atggcagccatagaaaggcagttagagcccaatgtagatgaaacagccacaagagacaag
agtagggtagttggatttgtgagtgcaggtgttgtagaatccggtgcacagaagactact
gcaaacaacgaggacatcgagctccctgaagaaagtgattctgaaggagaagaagatgat
gatgggaaagttgagattgcacaaaaagatgtacccgatgctgtgtttggaggcttagtc
cgaaagagggaagaatctgagaaagacgacggtggtgatggttcagacagtcatcttggt
gcacttgagaggataaagcgacggagacaagccgcctcctag
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