Ipomoea triloba (trilobed morning glory): 116029488
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Entry
116029488 CDS
T07384
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03020
RNA polymerase
itr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
116029488
09124 Replication and repair
03420 Nucleotide excision repair
116029488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116029488
03400 DNA repair and recombination proteins [BR:
itr03400
]
116029488
Enzymes [BR:
itr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
116029488
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
116029488
DNA repair and recombination proteins [BR:
itr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
116029488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
116029488
NCBI-ProteinID:
XP_031127399
LinkDB
All DBs
Position
9:complement(4212617..4220294)
Genome browser
AA seq
1190 aa
AA seq
DB search
MDLEEDEYEQQYNDDEEEITQEDAWAVISAYFEDKGLVRQQLDSFDEFIQNTMQEIVDES
ADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTY
SAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGE
CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTM
FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTPM
MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKDILQKEMLPHVGVGEYC
ETKKAYYFGYIIHRLLLCAIGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRS
YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST
LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAA
YPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNT
EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQALQLRESPEEGGWHDLVA
KGFIEYIDTEEEETTMISMTINDLIQARLNPGEAYSVTYTHCEIHPSLILGVCASIIPFP
DHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA
GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR
ANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLSQEDAQGQSARYTKRDHSTSL
RHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW
TVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHK
CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEG
RSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAIANLKKSSFEC
RGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggatttggaggaggatgagtatgaacagcagtacaacgacgacgaggaagagataacg
caggaggacgcgtgggcggtgataagtgcatacttcgaggataaaggtctggtgaggcaa
cagcttgactccttcgatgagttcatccagaacactatgcaggaaattgttgacgagtca
gctgacatcgagatccgacctgagtcccagcacaatcccggacaccagtccgatttcgcc
gagactatttacaaaatcaattttggtcaaatctatcttagtaagccaatgatgacagag
tcagatggtgaaactgcaaccttattcccgaaagctgcaaggttaaggaatctgacatac
tctgctccgctctatgtggatgtctcaaagagagtcatcaagaaagggcatgatggtgaa
gaagttactgaaactcaggacttcactaaagttttcatcgggaaggttcctataatgctt
cgatcaagttattgcacattgtatcaaaattcagagaaagatttgactgagcttggggag
tgtccatacgatcaaggtggctatttcataattaatgggagtgagaaggttctaattgct
caggaaaagatgagtacaaatcatgtctatgtgtttaagaagaggcaaccaaacaagtat
gcatatgtggcagaagtccggtcaatggcagagtctcaaaacagaccaccaagtactatg
tttgtgcgaatgctctcacgaactagtgccaaagggggttcttctggtcaatatattcgt
gccacacttccatatatcaggacagaaattcctattataattgttttccgagctttaggt
tttgtcgctgacaaagatatactggaacatatctgctatgattttaatgatacaccaatg
atggagttgctgcggccctctttggaagaagcatttgtcattcagaatcaacaggttgct
ctggattatattgggaagagaggggctactgttggtgttactaaggagaagagaatcaag
tatgctaaagatattcttcagaaagaaatgcttcctcatgttggggttggagaatattgc
gagacaaagaaagcttactattttgggtatatcatccaccggcttctgttgtgtgcaatt
ggccgaagggctgaggatgatagggatcattatggcaacaagagattggatcttgctggt
cctttgcttggtggtttatttcgaatgcttttcaggaagttaactcgtgatgttagatct
tatgttcagaagtgtgttgataatggtaaagatgttaatctgcaatttgcaattaaagca
aaaaccattacaagtggccttaagtactcactggctactggaaactggggccaagctaat
gctgcaggtacaagagctggtgtttctcaggtgttgaatcgcttgacttatgcctcaact
ttgtcacacttgagaaggttaaattctccaataggccgcgaagggaaactagctaaaccc
aggcaattacacaattcacaatgggggatgatgtgtccagcagaaacaccagaaggacaa
gcatgtggactggtgaagaatctagcactaatggtgtatataacagttggttcagcagca
tatccaattttggagtttttggaggaatggggcactgagaactttgaggaaatttctcct
gctgtcattccgcaagctacgaagatatttgtcaatggtacttgggttggaattcaccgt
gacccagatatgttggtgagaacactgagacggttaaggagacgggttgatgtcaatact
gaggttggtgtagttcgagatatccgtttgaaggaactacggatctacactgactatgga
cgctgcagtcgtccattgttcattgtggagaagcaaaggcttctcattaagaagaaagat
attcaagcattgcaactaagggaatctcccgaggaaggtggttggcatgacctggtggcc
aagggatttatcgagtacattgacactgaagaggaagaaacaactatgataagcatgacc
attaatgatctcatacaagcaagacttaatccaggggaggcttattctgttacctatact
cattgtgagattcatccttcactaattttgggcgtctgcgcttcaattattccatttcct
gaccacaaccagtctccccgtaatacataccagtcagctatgggtaagcaagccatggga
atttatgtgaccaactaccaattccgaatggacacattggcctatgtgctatattatcct
cagaagcctcttgtaaccactcgagccatggaacacttgcacttcaggcagctacctgct
ggcattaatgccattgttgctattgcctgttattcaggatataaccaagaagattctgtc
attatgaatcagtcatcaattgatcgtggatttttccgatctttatttttccgctcatat
agggatgaagagaaaaagatgggcacactggtcaaagaggactttggacgccctgacaga
gctaatactatgggaatgagacatggttcttatgataagttggatgatgacggtcttgcc
ccacctggaactcgagtttccggtgaggatgtgattattgggaaaactactcccctctcc
caggaggatgctcaaggccaatctgcccgttacacaaagcgcgaccatagtaccagtttg
cgtcatagtgaaactggtatggttgaccaggttctactaacgacgaatgctgacgggtta
aggtttgtgaaagtgagggttagatcagttcgaatccctcagattggcgacaagtttagc
agtcggcatggtcagaagggaacagttggcatgacatacacgcaagaagacatgccgtgg
actgtggaaggcatcactcccgatattattgtgaaccctcatgctattccttctcggatg
accattggtcagctgattgagtgtatcatggggaaagttgcagcgcacatgggaaaagaa
ggagatgctactccattcacggatgttactgtggacaacatcagcaaagctctgcacaaa
tgtggttaccagatgcgtggttttgagaccatgtacaatggtcacacagggcgacggctt
accgctatgatattccttggacctacatactaccaaaggttgaagcatatggttgatgac
aagattcattctcgggggagaggtcctgtgcaaattctcacaaggcaacctgcggagggt
cgatcacgtgatggtggtctccggtttggggagatggaacgagattgcatgattgcgcat
ggtgctgctcattttctaaaagaaaggttgtttgaccaaagtgatgcatatagagttcat
gtttgtgaacactgtggcttgattgctatagcaaacctcaagaagagctcttttgaatgc
cgaggctgcaagaacaagactgatattgtccaggttcatattccttatgcatgcaagtta
ttgttccaagagctcatggccatggccatagcaccaagaatgcttacaaaggatgtcaaa
caagctaaggaccaaaagaagaaaggagcataa
DBGET
integrated database retrieval system
