Ipomoea triloba (trilobed morning glory): 116029965
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Entry
116029965 CDS
T07384
Name
(RefSeq) pre-mRNA-processing factor 17-like isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116029965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
itr03041
]
116029965
Spliceosome [BR:
itr03041
]
Complex C
Other components
Step II factors
116029965
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD_LRWD1
eIF2A
Beta-prop_NWD2_C
Beta-prop_SCAP
PQQ_2
Motif
Other DBs
NCBI-GeneID:
116029965
NCBI-ProteinID:
XP_031127886
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Position
1:complement(29056372..29061802)
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AA seq
600 aa
AA seq
DB search
MDLLHSYADDEMDDEEQSEEQPQSSNQNPNSQPFEHLNHSPDSSPVRMSLPSKSAAPKVN
DTMLALTVAGSAARALSKPLDPTQHTVSFNPTYDQLWAPIYGPAHPYAKDGLAQGLRNHK
LGFVENAAIEPFVFDEQYNTFQKYGYAFDPSANNFVGDMDALKKNDAISVYNIPQHEQKK
RKLEKKKEMMENDQGDGEEDVDAAEVDNPATEVWLRKNRKSPWSGKKEGLQTELTEEQKK
YAEEYAKKKGEEKGEREKGEHLVEKSTFHGKEERDYQGRSWIAPPKDAKPQNDHCYIPKR
LVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIW
FCNDGTKFLTASYDKNIKYWDTETGKVISTFSTGKVPYVVRLNPDEDKQNVLLAGMSDKK
IVQWDINTGQITQEYDQHLGAVNTITFVDDNRRFVTSSDDKSLRVWEFGIPVVIKYISEP
HMHSMPSISPHPNGNWLAAQSLDNQILIYSARERFQLNKKKRFAGHVVAGYACQVNFSPD
GRFVLSGDGEGRCWFWDWKSCKVFRTLKCHDGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggatctcttacactcgtatgctgatgatgaaatggacgacgaagagcaatctgaagaa
caaccacaatcctccaaccaaaaccctaattcccaaccgtttgagcatttgaatcactct
ccagattcatctccagtccggatgtcactcccatccaaatctgccgccccaaaagttaac
gacaccatgttggccctcacagttgctggaagtgcggctcgagctctttcaaaacccctc
gacccaactcaacacacagtctcatttaatcccacttatgaccagctctgggcaccaatt
tatggccctgcacacccttatgcaaaggatggccttgcacagggcctccgcaaccacaag
ttggggtttgtggaaaatgctgctattgagccatttgttttcgatgagcagtataatacg
tttcaaaaatatggttatgcatttgacccctcggcaaataactttgttggggatatggat
gcattgaagaagaatgatgcaatttcagtgtataatataccacaacacgagcagaagaag
aggaagcttgagaaaaagaaggagatgatggagaatgatcagggagatggtgaggaggat
gttgatgcagcagaagtggataatccggccactgaggtgtggttgaggaagaatagaaag
agcccttggtctgggaagaaggagggtttgcaaactgagctaactgaggagcaaaagaag
tatgctgaagagtatgcgaagaagaagggtgaggagaaaggtgaaagagaaaagggagag
catttggttgagaagagtacatttcatggtaaggaagagagggattatcagggaaggtca
tggattgcacctcctaaggatgcaaagccacagaatgatcattgttatattccaaagaga
ttggtgcatacttggagtggccacacaaaaggagtttctgctattaggttcttccccaag
catggccatttgattctctctgctgggatggatacaaaagtaaagatatgggatgttttc
aattcaggcaagtgtatgaggacttacatggggcactcaaaggcagtgagagatatttgg
ttttgcaatgatggaactaaatttttaaccgcaagctatgacaaaaatattaagtattgg
gatacagagactggcaaggtgatatctacattttccacagggaaggtaccttatgtggtg
aggcttaatcccgatgaggataaacagaatgtacttctggcgggtatgagcgataagaag
atagtacagtgggatattaacactgggcagattactcaggagtatgatcagcacctcgga
gcagttaatacaatcacatttgtggatgacaataggaggtttgtaacttctagtgatgat
aaatctctccgcgtttgggaatttggcattcctgttgttattaagtatattagtgaaccc
catatgcactctatgccatccatttcaccacatccaaatgggaattggcttgcggcccag
agtttggacaatcaaattcttatctacagcgctagagagaggttccagctgaacaagaag
aagagatttgctggacatgttgtagctgggtatgcatgtcaggttaatttctcacctgat
gggcggtttgtcctctccggagatggtgaaggtagatgctggttttgggattggaagagt
tgcaaagtctttagaaccctcaagtgtcatgatggggtatgcattggttgcgagtggcat
ccattggagcaaagtaaagttgctacgtgtggctgggatggcttgatcaaatactgggac
tag
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