Ipomoea triloba (trilobed morning glory): 116029988
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Entry
116029988 CDS
T07384
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116029988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116029988
03012 Translation factors [BR:
itr03012
]
116029988
Enzymes [BR:
itr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116029988
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116029988
Translation factors [BR:
itr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116029988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
T2SSE
BEX
ATPase
AAA_19
Motif
Other DBs
NCBI-GeneID:
116029988
NCBI-ProteinID:
XP_031127916
LinkDB
All DBs
Position
9:9142075..9150741
Genome browser
AA seq
1039 aa
AA seq
DB search
MSLRLLFYCPTSFQFRLYKPRSVARSSFNYNLCTRRVPTLAMSNRPNYQGGRRGGAGRSR
SGGGGGGRGGGGGGGRGGGRGGEQRWWDPAWRAERLRQKAAEMEVMNENEWWGKIEQFKR
GGEQEMIIKRNFSRDDQGKLSDMAYQLGLHFHAYNKGKALVVSKVPLPNYRADLDERHGS
SQEIRMSTEIERKVGNLLSSSQASVSDGNSSSTHSYTANVSSNAVHAATAAAALESDAAK
ERLNTELKQKQEKLRATDNVKAMMSFREKLPAFKVKSEFLKAVASNQVLVVSGETGCGKT
TQLPQFILEEEIASKRGANCNIICTQPRRISAISVAARISSERGENLGETVGYQIRLESK
RSAETRLLFCTTGVLLRQLVRDPYITGITHLLVDEIHERGMDEDFLLIILRDLLPRRPDL
RLILMSATINAELFSKYFGNAPTIHIPGLTYPVSELFLEDVLEKTRYRIKPEFDNVQGNS
RRRHRQQESKKDPLTELFEDVDIDSHYKGYSMTTRQSLETWSGSQLDLGLVEATIQHICC
HEGDGAILVFLTGWDDISKLLDKIKVNNFLGDPRKFLVLPLHGSMPTVNQREIFDRPPPN
VRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRA
GRVQPGVCYRLYPKLLHDAMLEYQLPEILRTPLQELCLHIKSLQLGAISSFLNKALQPPD
PLSVQNAIELLRTIGALDDAEELTPLGRHLCTLPLDPNIGKMLLMGSFFRCLNPALTIAA
ALAYRDPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAYEGWKDAKRQGQERAFCWENF
LSPITMQMMADMRMQFLDLLSDIGFIDKSKGPQAYNEYSNDLEMVCAILCAGLYPNVVQC
KRRGKRTAFYSKDVGKVDIHPASVNASVHLFPLPFLVYSEKVKTSSIFIRDSTNISDYTL
LMFGGNLIPSKSGDGIEMLGGYLHFSASKSVLELIKKLRGELDKLLKRKIEEPGLDISTE
GKGVVAAVVELLHSQNVRY
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgcgacttctcttctactgtccgacttcctttcagttccgtttgtacaagccg
cgttcagttgcgcgaagcagcttcaactacaatctctgtactcgtcgggtaccgacctta
gccatgtccaatcgtcccaattaccaaggtggccgtcgcggcggcgctggccgcagccgc
agcggtggtggtggaggagggcgaggtggcggtggtggaggcggccgtggcggagggcga
ggtggggagcagcgctggtgggaccccgcctggcgagctgagcgtcttcgtcagaaagct
gccgagatggaggtaatgaacgagaatgagtggtgggggaaaattgagcagttcaagaga
ggaggagagcaggagatgataattaagagaaactttagcagggatgatcagggaaagttg
tctgatatggcatatcagttggggcttcactttcatgcgtataacaagggtaaggcactt
gttgtgagcaaagttccattacctaattaccgggcagatcttgatgagcgccatggatca
tcacaggagatacgaatgtctacggagattgagagaaaagttggaaatctattgagcagt
tcacaagcatctgtgtctgatggaaattcctcttctacacactcatatactgccaatgta
tcatctaatgctgtacatgctgcaacagctgctgctgcattggagagtgatgctgccaag
gagagacttaacactgaacttaaacagaaacaagaaaagctgagggcaactgataatgtt
aaggcaatgatgtcattcagagaaaaacttccagcatttaaagtaaaatctgagtttttg
aaagcagttgcttcaaatcaggtactggtagtatcaggagagactggctgtgggaaaacc
actcagcttcctcaattcattttggaggaagagatagcatctaaacgtggagccaattgc
aacataatttgtacgcaacctcgtcgtatatctgccatatctgttgcagctcgaatctcc
tctgaaaggggtgaaaatctaggagaaactgttggttaccagatccggctggagtcaaag
cggtctgctgaaacaaggttattgttttgtacgacaggggtgctgctgcgtcaactggtc
cgggacccatatataactggaattacccatttgttggttgatgaaattcatgaacgaggc
atggatgaagattttcttctaataattctacgtgaccttcttccccggcgtcctgatctg
cgtctcattctgatgagtgctaccattaatgctgagctgttttccaagtactttggaaat
gcacccacaattcatatcccgggactaacctatcctgtatcagaattatttctagaagat
gtattagaaaaaacccgttacagaataaagccagagttcgacaatgttcagggaaactca
aggagaaggcaccgtcaacaagaatctaagaaagatcctttgactgagttatttgaggat
gtggacattgattcccattacaagggctacagcatgacaacaagacaatctcttgaaact
tggtcaggttcacagcttgatttgggccttgtggaagcgactattcagcatatctgttgt
catgaaggtgatggtgcaattcttgtttttcttactggttgggatgatatttccaagctg
cttgataaaattaaagtcaataatttccttggagatccaagaaagtttttagttctccct
ctacatggctcaatgcctacagttaaccagcgagaaatatttgatcgcccaccccctaat
gttaggaaaattgttcttgcgacaaatattgcagaaagcagtataactattgatgatgta
gtgtatgtcattgactgtggaaaggctaaagagactagttatgatgcacttaacaaactg
gcttgtttattaccatcatggatttcgaaggcctcagcacatcagaggcgtggtcgtgct
ggtcgtgtgcaacctggcgtttgttatagattgtacccaaaactactacatgatgctatg
cttgaatatcaacttcctgagattcttcgtacacctttacaagagctttgcctccatatt
aagagcttacagttgggagctatcagttcatttctgaacaaggcacttcaacctccagat
cctctctctgttcaaaatgctattgaacttctccgaacaattggagctctagatgatgca
gaggagcttactccacttgggcgccacttatgcactttgcctttggacccaaatattgga
aaaatgcttctgatgggttccttcttccgatgcctaaaccctgcactgacaattgctgct
gctcttgcatatcgagacccatttgtccttcctataaacaggaaagaggaagcagatgct
gcgaaaagatcctttgctggtgattcttgcagtgaccatattgcacttctcaaagcttat
gaaggatggaaagacgccaagcgtcagggtcaggaaagagccttctgttgggaaaacttc
ttgtcaccaataaccatgcaaatgatggcagatatgagaatgcaatttcttgatcttctt
tctgatattggttttattgataaatccaaaggtccgcaggcttacaatgaatacagtaat
gatttggagatggtatgtgcaatcctctgtgctgggctctaccctaatgttgttcagtgc
aaaagaagaggaaaacgcacagcattttactccaaggatgttggaaaagttgatattcat
ccagcatctgtcaatgccagtgttcatctcttccctctccctttcttggtctacagcgaa
aaggtcaaaacaagcagcatcttcataagagactcaacaaacatatcagactacacgctt
cttatgtttggtggtaatctgattcctagtaaaagtggagatggtattgaaatgctcggg
gggtaccttcacttctctgcgtcaaagagcgtgctggaattaataaagaaactgagggga
gagcttgataaacttctgaagagaaaaatcgaagagcctggccttgatatttcaaccgag
ggaaagggtgtcgttgctgctgttgttgagctgttacacagtcagaatgttcggtactga
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integrated database retrieval system
