Ipomoea triloba (trilobed morning glory): 116030214
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Entry
116030214 CDS
T07384
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116030214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116030214
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116030214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
116030214
NCBI-ProteinID:
XP_031128250
LinkDB
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Position
9:complement(5012674..5016839)
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AA seq
472 aa
AA seq
DB search
MQSDLGKLFIGGISWDTTEEHLKEYFSAYGEVLEAVIMKDRTTGRARGFGFIVFADPTVA
ERVIKEKHNIDGRMVEAKKAVPRDDQSTMSRSSNSIQGSPGPRRTRKIFVGGLASTVTES
DFKKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKVLLKTFHELNGKMVEVKR
AVPKELSPGPSRSPLGGYNYGLSRINNFLNSYTQAYSPNAVGGYGVRMDNRFSPMVGGRS
NFAPFASGYGMGLNFEPGLSPGYGGSANFNTTLNYGRGPYYVNNSSRFGGLVGLDGGNGG
NSSFFSSTRDLWGNGGLNYGTNSTNSSNFGGSGNGNLGGGAMNNRGVWGSSTYSAQGGGG
NVSGQSGNLGYGSADNSYGLTGGTYGRNVAMSGGPTSSYAASNGSYERSFADFYDNDFKY
TDPTWGSANSERDGSGSFGYGPGNTPSEMPAQSAAGSVCSYGVTNRQNSRGI
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctgatcttggaaagttattcattggtgggatttcatgggacacaactgaagag
catctcaaggagtattttagtgcttatggagaggttttggaagctgtaattatgaaggat
aggactactgggcgtgcccgtggttttggttttatagtgtttgctgatcctactgttgct
gaaagagttattaaggagaaacacaacattgatggtaggatggttgaggcaaagaaggct
gttcctagggatgatcagagcacaatgagccgaagcagtaacagcattcaagggtctcct
ggtccaagacgcacaagaaaaatatttgttggtggcctagcatccactgttacagaaagt
gacttcaagaagtattttgaacaatttggaacgatcacagatgtagtggtaatgtatgat
cacaacactcagcggccaagaggctttggattcataacttatgattctgaggatgctgtg
gacaaagtattgctgaagacttttcatgagctgaatggcaaaatggttgaggtcaagcgt
gcagttcccaaggagttatctcctggtcctagccgaagtccactgggtggatacaactat
ggattaagtaggatcaataactttcttaatagctatacacaagcatactctccaaatgca
gttggagggtatggagtcaggatggataataggttcagccctatggttggtggtagaagt
aactttgctccatttgcctctggttatggaatgggcctcaactttgaacctggattgagc
ccgggatatggaggaagtgcaaatttcaatactactttgaactatgggcgtggaccatat
tatgttaataactcgagtaggtttggtggtcttgttggacttgatggtggaaatggagga
aactcttcattttttagttcaactcgggatttgtggggtaatgggggattgaactatgga
accaactctacaaactcaagcaattttgggggatctgggaatggtaacctcggaggggga
gcgatgaacaacagaggagtttggggttcatctacttattctgcacaaggcggcggagga
aatgtttctggccaaagtggaaaccttggttatggaagcgctgataactcttatggtttg
actggaggaacatatggtagaaatgttgcaatgagtggcggtcctacatcatcatatgct
gcatccaatggtagctatgagaggtcttttgctgatttttatgacaatgacttcaagtat
actgatccgacttggggttctgcaaattcagagcgagatggatctggttcatttggttat
ggtccaggcaacacaccctctgagatgcctgctcaaagcgctgcaggttctgtttgtagt
tatggtgttacaaatagacagaatagccgaggtatctag
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