Ipomoea triloba (trilobed morning glory): 116030388
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Entry
116030388 CDS
T07384
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116030388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116030388
03036 Chromosome and associated proteins [BR:
itr03036
]
116030388
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116030388
Coactivators
SAGA/TFTC/STAGA complex
116030388
Chromosome and associated proteins [BR:
itr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116030388
STAGA complex
116030388
TFTC complex
116030388
SAGA complex
116030388
SLIK complex
116030388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_HPS5
Nbas_N
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
RAB3GAP2_N
WD_LRWD1
WD40_like
LisH
LisH_PAC1
PALB2_WD40
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
116030388
NCBI-ProteinID:
XP_031128478
LinkDB
All DBs
Position
9:complement(26677820..26689775)
Genome browser
AA seq
681 aa
AA seq
DB search
MDEDDIEKAVIAYLKKKGFKQTELAFQEEHQKQSKNINNSSSLSNTNSSASSHTDPDIAK
QILSFSQSENVPAKYHEGYSKLRSWADSSLDLYKHELLRVLYPVFLHCFMDLVAKGHIQE
ARAFFNSFREDHEMMHLRDLQKLEAVLSPSHLEEMEFAHFLRQSKVNIKMCQYSYDLLLQ
YLHKAQAIVMLGIINEHINFQVSPGQPSSVSDDAEVVTLIGSGQDAASLINQKEIQWGLL
EDSIEERFEKAGGLLSDSEKVEGESKEGEAEENKTKSVEGGKQGPSLKKLKKDKVGGPTG
KVSHIEGGTTSAAPHVKPELPLPAIPMEVEHSILEDLRNRVQLSSMALPSVNMYTFLNTQ
NGLNCASISHDGSLVAAGFSDSSLKLWDMAKLGQQPGNASLQGDIDSPPSEQVLGANGQR
RCYTLFHGHCGPVYSASFSPYGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQF
SPVGHYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRL
WDVQSGECVRIFIGHRSMILSLAMSPDGRYMASGDEDGKIMVWDLASGRCITPLVGHASC
VWTLAFSCEGSLLASGSADCTVKLWDVTTSTKMPKSEENKSGSTNRLRSLKTLPTKSTPL
YALRFSRRNLLFAAGAFSKSA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacgacattgagaaggcggtgatagcgtatctgaaaaagaagggtttcaag
caaacggagcttgctttccaggaggagcatcagaaacagagcaaaaacatcaacaactct
tcctctctatccaacactaactcctcggccagttctcacactgaccctgatattgccaag
caaattctctctttctcacagtctgaaaacgttcctgcaaagtatcatgaggggtacagc
aagcttcggtcttgggcagatagttctctcgatttgtataagcatgaattgcttcgtgtc
ttgtaccctgtatttctccactgtttcatggatcttgtggctaaaggtcatattcaggaa
gcccgagcctttttcaatagcttccgggaagaccatgagatgatgcacttacgtgatctc
cagaaactagaagctgttctgtcaccatcacatctagaggaaatggaatttgcacatttt
ttacggcaaagcaaagtgaacataaaaatgtgccagtattcctatgaccttttgctgcaa
tacttgcacaaggcacaggccattgtgatgcttgggattatcaatgagcacataaacttt
caagtttctcctggacagccaagttcggtttcagatgatgctgaagttgtaactcttatt
gggagtggccaagacgctgctagtttaataaatcagaaagaaattcagtggggattgctt
gaagattccatagaagagcggtttgagaaggcaggaggtctgctttcagattcagagaag
gttgagggagaatctaaagaaggagaagctgaagaaaacaagacaaaatcagttgaagga
ggaaagcaaggcccttctctgaaaaagctgaaaaaggacaaggttggaggtccaacaggg
aaagtttctcacatagagggtggcacaacatctgctgcaccacatgttaaaccagagtta
cctttgccagcaatacctatggaggtagaacactctattcttgaagacttgaggaaccgt
gtgcagctgagtagcatggcattgccatctgtgaacatgtatacctttctcaatactcaa
aatggactaaactgtgcatcaatatctcatgatggatcactggtggctgctgggttctca
gattcttcattaaagttgtgggatatggcaaagcttgggcaacaacctgggaatgcttcc
ttgcagggtgatattgactcccctccaagtgagcaggtgcttggtgcaaatggacaacga
agatgttatacattatttcatggtcattgtggacctgtttattctgcatccttcagtcct
tatggtgattttctcctatcgtcatcatcagattcaaccattcggttatggagcacgaag
ttaaatgcaaatcttgtttgctataagggccataattatcctgtatgggatgttcagttt
agtcctgttgggcattactttgccagtgcttcacatgatcgaacagcaaggatctggtca
atggacagaatacagcctctgaggataatggccggtcacttatctgatgttgattgcgtg
caatggcatgcaaactgcaactacattgcaactggatcaagtgacaaaactgttcgcttg
tgggatgtccagagtggcgagtgtgtcagaattttcattggccataggagtatgatattg
tcgttggcaatgtcacctgatggtcgttatatggcatcaggtgatgaagatggaaaaatc
atggtgtgggatcttgcaagtggtcgttgtattacccctttggttggtcacgcctcttgt
gtatggacacttgctttcagctgtgaaggttctcttcttgcatctggttctgctgattgc
actgtgaaattatgggatgtaaccacgagtactaagatgccaaaatctgaagagaataaa
tctggaagtaccaataggcttcgatcattgaagactctccctactaaatccactccatta
tatgctttgcggttttctcgaagaaatcttctctttgctgctggtgctttctcaaaaagt
gcataa
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