Ipomoea triloba (trilobed morning glory): 116031029
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Entry
116031029 CDS
T07384
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116031029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116031029
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
116031029
mRNA cycle factors
Common to processing body (P body) and stress granule
116031029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
116031029
NCBI-ProteinID:
XP_031129319
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All DBs
Position
9:7742771..7750465
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AA seq
991 aa
AA seq
DB search
MTIPMDNSVDHSSRERVQRLFNKNVELENKRRKAAQARIPSDPNSWQQMRENYEAIILEN
HAFSEQHEIEYALWQLHYRRIEELRAYLNAALSASGSTTSQNGKGPSRGGPDRITKIRTQ
FKTFLSEATGFYHDLMLKIRAKYGLPLGYFSDDPENQIPSSKDGSKSADMKKGLISCHRC
LIYLGDLARYKGLYGEGDSKARDFSAASSYYMQASSLWPASGNPHHQLAILASYSGDELV
AIYRYFRSLAVENPFTTARDNLIIAFEKNRQNYSQLLGDAKSSVKVAPARVSGKGRGKGD
ARFPQKEERVEANPVKERASSISDIFKIFSTRFVRLNGVLFTRTSLETFGEVLSVVKNDL
LELLSSGPDEKYSFGSDAADCRLAVVRLVAILIFTVYNVNREAENQSYAEILQRSVLLQN
AYTAVFEFMGHVVERCGQLNDPSASFLLPGVMIFVEWLACHEDIAVGNEPEETQANARSF
FWNNCITFLNKLLSSGSKFVDEDEDETCFFNMSKYDEAETANRLALPEDFELRGFLPLVP
AQLILDFSRKHSLGGDVGSKERKARIQRLVGAGKALASVVRVGGDGVYFDTKAKKFVIGT
KPQISDDYWLSSTLEDPTLSGVEQENPVGGQMVLGALSPKPQLFIEGEEEDEVIVFKPSI
NEKHMDGFSSNMITSHVPVSSVTTVNAPLPAVNVSGVDLGIDMGVFSSGLDGLLMQNGFN
PSLRLPTSVVNNNTHYVSSIQPSSSIWSSEQSSVTNGLAHLNLMENGSAKSEMQDHSGLM
QTAAYSVPFPQSLNFTTADNIPIQFSEVCVPSKLNSISVAGLDCMAVKSSSIISTGSKKN
PVSRPIRHRGPPPGFGSVPPKVMDDSSSAMTLKNENAHALPMDDYSWLDGYQLPSTNQSS
GYSTINQSVQASQPPNCSNSMGMASFPFPGKQVSPLYVQADNQKGWPDFQMSEQMKLYQE
QQQQLQRGNQQTVALPQQYQGQSLWEGRFFV
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgaccattccgatggataacagtgtcgatcattcatctcgtgagcgtgttcaacgcctc
tttaacaagaatgttgaattagagaataagcgtaggaaagcagcacaagccagaattcct
tctgacccaaattcatggcaacaaatgcgtgaaaattatgaagctattatccttgagaat
catgctttctctgagcaacatgaaatagagtatgcattgtggcagttgcattacaggaga
attgaggaattacgtgcatacttgaatgctgctttatctgcttctggatcaaccacatct
caaaatgggaaaggtcctagtcgaggtgggcctgatcgaatcacaaagattcgcacacaa
tttaagacattcctgtctgaagcaacaggattttaccatgatttgatgttgaaaattagg
gcgaagtatggtctgccactaggatatttctctgatgatcctgaaaaccaaattccgtcg
tctaaagatggaagtaaatctgctgacatgaagaaaggtttaatatcctgccaccgttgt
ctgatttatctcggtgatcttgctcgttacaaaggtttatatggcgaaggtgattctaaa
gctcgagatttttcagcagcatcaagctattacatgcaagcttcctcgctttggcctgca
agtggcaatcctcatcatcagctcgcaatcttggcttcctactcgggtgatgaattggtt
gcaatttatcgatattttcgaagtcttgctgtagagaaccccttcaccactgcaagggac
aacttgattattgcatttgagaagaatcgacagaactattcgcagcttttgggagatgct
aaatcctctgtcaaagttgcacctgcacgtgtatctgggaaaggaagaggtaagggagat
gcaagatttccacaaaaagaagaaagggttgaagccaatccagttaaggaaagagcatca
agtatatccgatattttcaaaattttcagcacaagatttgtccgattaaatggcgttctg
tttacacgcacaagcttggagacatttggagaagtgctttcagtggttaaaaatgattta
cttgagcttctttcttctggaccggatgagaagtacagttttggttcagatgctgctgac
tgcaggcttgcagtagttaggcttgttgctatccttatattcactgtgtacaatgtgaat
agggaagctgaaaatcagtcatatgctgagattcttcagcgctcagttcttctacagaat
gcgtatactgctgtttttgagtttatgggtcatgtggttgagaggtgtggtcaattaaat
gacccctcagcaagcttcctactgccaggtgttatgattttcgtagaatggttagcctgc
catgaagatattgctgtaggtaatgagccagaagaaacacaagcaaatgctagatccttt
ttctggaacaattgcatcacctttttaaataagctgctatcaagtgggtcaaagtttgtt
gatgaagatgaggatgaaacatgtttcttcaatatgagcaagtatgatgaagctgagact
gccaatcgtcttgcattgcctgaggactttgaacttagaggatttcttcctcttgttcct
gcacagcttatacttgacttctcaaggaagcattcattgggtggtgatgttggcagtaaa
gaaagaaaagcgagaatccagaggcttgtaggggctggtaaggctcttgctagtgtggtt
agagtaggaggagatggagtttactttgatacgaaagcaaagaagtttgttattggcact
aagccacaaatttctgatgattattggcttagtagcactttggaagatcccacattgagt
ggagttgaacaagagaatccggttggaggacaaatggttctcggagccttgtcccctaaa
ccacagttgttcatagaaggtgaagaagaagatgaggtgattgtgtttaagccatccata
aatgagaaacatatggatggattctcttcaaatatgattacttcacatgttccagtatct
agtgttacaaccgtgaacgcacctcttcctgctgttaatgtgtcgggggttgatttagga
attgatatgggagtgttttcatctggacttgatggattgcttatgcaaaatggtttcaat
cctagcttaaggctgcctaccagtgttgttaataacaatacccattatgtgtcatcaatc
caaccaagttcttctatatggtcgtcggaacaaagcagtgttaccaatggattggcccac
ttgaatttaatggaaaatgggtctgctaagtctgagatgcaggatcattctggactaatg
cagactgctgcatattcagtcccctttccacagtcacttaattttactactgctgataat
attcccatccagttttctgaggtttgtgttccatcaaagttaaattcaatttcagtagct
ggtttggattgcatggcagtgaagtcttcatccatcatctctactggctcaaagaaaaat
ccagtaagtcgacctattagacacaggggtccacctcctggatttggttctgttcctcct
aaagtcatggatgactcatcctcagccatgaccttgaagaatgaaaatgcacatgctctc
ccaatggatgactatagttggcttgatggctatcagttaccttcaacaaaccaaagctca
ggatacagtactattaatcaatcagtgcaggcaagtcaacctcccaactgcagcaactct
atggggatggctagctttcctttccctgggaaacaagtatcaccactgtatgtccaggct
gacaaccagaaaggctggccagactttcagatgtccgaacaaatgaaactatatcaggaa
caacagcaacaacttcagagaggaaatcaacagactgttgcactgcctcagcagtatcag
gggcagtctctgtgggaaggtcgtttcttcgtgtga
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