Ipomoea triloba (trilobed morning glory): 116031409
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Entry
116031409 CDS
T07384
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116031409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116031409
03019 Messenger RNA biogenesis [BR:
itr03019
]
116031409
Transcription machinery [BR:
itr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116031409
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116031409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
116031409
NCBI-ProteinID:
XP_031129470
LinkDB
All DBs
Position
10:24054354..24062887
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AA seq
677 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDSGPTHPTASVPVIQSSDQNAAVAGPNSINPSNVASAPAGAAPD
GGMGGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRIYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLSSYNYGYSNKFSQ
NRNANFAPQAEKSQNAQGPTGASQAIKTSTTESAFPQLQPNQQVQQVQQQGSQGQTPSTG
QQNQTNRSAIPLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSMENVI
LIFSVNRTRHFQGCAKMTSRIGGATKGGNWKHEHGTAHYGRNFSVKWLKLCELSFQKTRH
LRNPYNENLPVKISRDCQELEASVGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVN
PERVNENPDIVPFEDNEEEEEEESEEEDESFGQAFGPVALGRGRGRGTAWPPMMPLGRGA
WPLPGNPGMRGFPPGMMGEGFPYAGVTPDGFPMDVFGMGPRPFAPYGGPRFSGDMMFHNR
PPGGGFGMMMGPGRGPYMGGMGPGSAGPPRAGQPVGMAPSFAPPPSQALQNSYRGKRDPK
APGSDRNDRFSSGSDQGKDKEMASSAGGPDDKAPYLQNSLRNDESESEDEAPRRSRHGEG
KKRRGSLEADATTPPEK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggagaaggaggtctgagcttcgacttcgagggaggtctcgattccggtccc
actcaccctactgcgtccgtaccggtgatccagtcatcggaccagaatgcagcggttgct
ggtccgaactccattaatccctcaaacgtcgcttctgcccccgcgggcgccgcgcccgac
ggcggaatgggcggaaaccgccggagcttccgccagactgtgtgccggcactggctgcgg
tctctctgcatgaaaggcgatgcctgcggcttcctacaccagtacgacaagtccaggatg
cccgtttgccgcttcttccggatttatggcgagtgccgcgaacaggactgtgtttataag
cataccaatgaggacatcaaggagtgcaacatgtacaaattggggttttgtccaaatggt
cctgactgccggtataggcatgctaaacttcctggacctccgcctcctgtagaagaggtt
cttcaaaaaattcaacatttatcatcctacaactatggttactcaaacaagttttcccaa
aaccggaatgcaaattttgcaccccaggcagaaaaatctcagaatgcacagggacctact
ggtgcaagtcaagccattaaaacttcaactacagaatcagcttttcctcaactgcagcca
aatcaacaagttcaacaggtccagcaacagggcagccagggtcaaacaccttccactgga
cagcaaaatcaaaccaataggagtgcaatacccctacctcaaggaacatctaggtacttt
atagtcaaaagttgcaatcgggagaatctggaattgtcagtacaacaaggagtatgggca
actcaaagaagcaatgaggctaaactaaatgaagcatttgattctatggaaaatgtcatt
ttgatcttttcagtgaatcgaactagacactttcagggttgtgcaaagatgacatccaga
attggtggtgctactaaaggaggaaattggaagcatgagcatggaactgcacattatgga
cgaaacttttctgtcaaatggttaaagctatgtgaattgtccttccagaagactcgtcat
ttgagaaacccatacaatgagaacttaccagtgaagattagcagagattgtcaagaacta
gaggcctctgttggggagcagttggcttccctgttgtatcttgagccagacagtgaactt
atggcaatctcactcgcagcagaatcaaaacgagaggaagagaaggcaaaaggtgtgaat
cctgagagggtgaatgagaatccagatattgtaccatttgaagacaatgaagaagaggag
gaagaagaaagcgaggaagaggatgagagctttggccaagcttttggaccagtggcccta
ggcagaggaaggggccggggaacagcttggcctcctatgatgcctttaggacgtggtgcc
tggccactccctgggaatcctggcatgcgggggtttcccccagggatgatgggtgaaggg
tttccctatgctggagtaacgcctgatggttttcctatggacgtatttggcatgggccca
cgtccttttgcgccatatggtggtccaaggttctccggtgatatgatgtttcataatcgt
ccgccaggtggtggatttggaatgatgatgggtccaggaagggggccatacatgggtgga
atgggtcccggatctgcaggcccaccgagagctggtcaaccagttgggatggctccatca
ttcgccccaccaccatcacaagccctgcaaaattcttatcggggtaaaagagatccgaaa
gcaccaggtagtgatagaaatgatagattcagttcagggtcagatcaaggtaaggataaa
gagatggcaagttcagccgggggacctgatgacaaagctccttatctgcaaaatagtctt
agaaatgacgaaagtgaaagcgaggacgaggcaccaagaaggtcaaggcacggtgaagga
aagaagaggcgtggtagcttggaggcggatgcaacaactccccccgagaaataa
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